Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0020069

Physical Location & Seq

Genomic Coordinates Forward (+)

2942072 .. 2944905

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGAGGGACGACGAGGTTGTCGATGTTGTGGAGAAGGAGGACGTGGAGCGGATCAAGGGGTACCCGAAGTTGGGGGTAGGGTCGGTTGGCCTGACGGGTCGTGGAAGTGATGGATTGCATGGCTATGTTCCTTCACTTGACCATGTTGTTGTTGATACTTTCACTGGTCAGTTCGGAGATTTAATTGCTGATTTAGCCCTTGATGCCACTAGAATAGTTGGAGTGGACCTCGGCCAGGGTTTACGAGAAGTGGATATTAAAAAGTACATCAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGATTCAGTGGTTCTGAAAGGAGTAATGATTAACAAAGATGTCATTGCTCCTGGAAAAATGAGAAGAAAGATTGCCAATCCGCGGATCATGCTTCTTGATTGTCCTCTTGAGTATAAGAAAGGCGAGAACCAAACAAATGCTGAAGCAAAAGAGCTCATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

156

Amino Acids

17.06

Weight (kDa)

5.26

Isoelectric Point (pI)

9.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	57 - 151	6.9e-16	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020069)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002183.1_g000023 Rmu_sc0019909.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026600 Rroxscaffold_6G00406910
rosa_samantha	Rh1CG017600 Rh1CG090300 Rh3BG167000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	52
AccII	CGCG	1 cut(s)	388
AciI	CCGC	3 cut(s)	52, 386, 388
AclWI	GGATC	2 cut(s)	62, 398
AcoI	YGGCCR	2 cut(s)	235, 295
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	2 cut(s)	65, 269
AfiI	CCNNNNNNNGG	4 cut(s)	73, 74, 238, 387
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	3 cut(s)	237, 289, 355
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	62, 398
AoxI	GGCC	3 cut(s)	91, 235, 295
Asp718I	GGTACC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	462
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	3 cut(s)	239, 291, 357
BfaI	CTAG	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	239, 291, 357
Bme18I	GGWCC	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	65, 288
BmrFI	CCNGG	3 cut(s)	239, 291, 357
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpuEI	CTTGAG	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	232, 238, 386
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 74, 238, 387
Bse1I	ACTGG	2 cut(s)	172, 298
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	239, 291, 357
BseDI	CCNNGG	3 cut(s)	232, 238, 386
BseLI	CCNNNNNNNGG	4 cut(s)	73, 74, 238, 387
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	172, 298
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	93, 237, 297
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	4 cut(s)	73, 74, 238, 387
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	93, 237, 297
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	54, 390
BspACI	CCGC	3 cut(s)	52, 386, 388
BspANI	GGCC	3 cut(s)	93, 237, 297
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	65, 288
BspPI	GGATC	2 cut(s)	62, 398
BspT107I	GGYRCC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	172, 298
BssECI	CCNNGG	3 cut(s)	232, 238, 386
BssMI	GATC	2 cut(s)	54, 390
Bst2UI	CCWGG	3 cut(s)	239, 291, 357
BstDSI	CCRYGG	1 cut(s)	386
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	57, 393
BstMBI	GATC	2 cut(s)	54, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 394
BstNI	CCWGG	3 cut(s)	239, 291, 357
BstSCI	CCNGG	3 cut(s)	237, 289, 355
BstUI	CGCG	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	93, 237, 297
BtgI	CCRYGG	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	165, 318
Cfr13I	GGNCC	1 cut(s)	229
Cfr42I	CCGCGG	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	64, 268
CviAII	CATG	3 cut(s)	122, 146, 394
CviJI	RGCY	6 cut(s)	93, 126, 200, 237, 297, 460
CviKI_1	RGCY	6 cut(s)	93, 126, 200, 237, 297, 460
CviQI	GTAC	2 cut(s)	64, 268
DpnI	GATC	2 cut(s)	56, 392
DpnII	GATC	2 cut(s)	54, 390
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	235, 295
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	237, 289, 355
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	3 cut(s)	125, 149, 397
FaiI	YATR	5 cut(s)	123, 129, 147, 395, 420
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	121, 145, 393
FriOI	GRGCYC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	93, 237, 297
Hin1II	CATG	3 cut(s)	125, 149, 397
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	229, 245
Hpy188I	TCNGA	2 cut(s)	179, 321
Hpy188III	TCNNGA	2 cut(s)	401, 413
Hpy8I	GTNNAC	2 cut(s)	229, 245
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	31, 144, 277
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 394
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	125, 149, 397
KpnI	GGTACC	1 cut(s)	67
KspI	CCGCGG	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	54, 390
LmnI	GCTCC	2 cut(s)	49, 358
LpnPI	CCDG	9 cut(s)	107, 153, 224, 251, 276, 303, 311, 342, 369
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	56, 392
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	2 cut(s)	54, 390
MboII	GAAGA	2 cut(s)	317, 381
MhlI	GDGCHC	1 cut(s)	462
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	297
MmeI	TCCRAC	2 cut(s)	202, 282
MnlI	CCTC	4 cut(s)	10, 34, 242, 420
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	3 cut(s)	185, 261, 336
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	388
MspR9I	CCNGG	3 cut(s)	239, 291, 357
MvaI	CCWGG	3 cut(s)	239, 291, 357
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 394
NdeII	GATC	2 cut(s)	54, 390
NlaIII	CATG	3 cut(s)	125, 149, 397
NlaIV	GGNNCC	2 cut(s)	65, 288
NmeAIII	GCCGAG	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	237, 289, 355
PspGI	CCWGG	3 cut(s)	237, 289, 355
PspN4I	GGNNCC	2 cut(s)	65, 288
PspPI	GGNCC	1 cut(s)	229
RsaI	GTAC	2 cut(s)	65, 269
RsaNI	GTAC	2 cut(s)	64, 268
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	462
SacII	CCGCGG	1 cut(s)	389
SaqAI	TTAA	3 cut(s)	185, 261, 336
Sau3AI	GATC	2 cut(s)	54, 390
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	3 cut(s)	239, 291, 357
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	6 cut(s)	21, 48, 234, 279, 288, 462
SfaNI	GCATC	1 cut(s)	196
Sfr303I	CCGCGG	1 cut(s)	389
SgrBI	CCGCGG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	3 cut(s)	52, 386, 388
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	237, 289, 355
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	185, 261, 336
Tru9I	TTAA	3 cut(s)	185, 261, 336
TscAI	CASTG	2 cut(s)	172, 318
TspRI	CASTG	2 cut(s)	172, 318
VpaK11BI	GGWCC	1 cut(s)	229
XagI	CCTNNNNNAGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.