Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019909.1

Orthogroup ID

OG0020069

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 387

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019909.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 256 bp

aatagttggagtggacctcggccagggtttacgagaagtggatattaaaaagtacatcaaggttgagaaggttcctggtggccagttggaagattcagtggttctgaaaggagtaatgattaacaaagatgtcattgctcctagaaaaatgagaagaaagattgtcaatccgcggatcatgcttcttgattgtcctcttgagtataagaaaggcgagaaccaaacaaatgctgaagcaaaagagctcatctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

9.3

Isoelectric Point (pI)

17.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020069)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002183.1_g000023 Rmu_sc0019909.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026600 Rroxscaffold_6G00406910
rosa_samantha	Rh1CG017600 Rh1CG090300 Rh3BG167000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	173
AciI	CCGC	2 cut(s)	171, 173
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	2 cut(s)	20, 80
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	22, 74
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	20, 80
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BciT130I	CCWGG	2 cut(s)	24, 76
BfaI	CTAG	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	24, 76
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	24, 76
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	17, 23, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	24, 76
BseDI	CCNNGG	3 cut(s)	17, 23, 171
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	22, 82
BsiHKAI	GWGCWC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	2 cut(s)	22, 82
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	171, 173
BspANI	GGCC	2 cut(s)	22, 82
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	17, 23, 171
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	24, 76
BstDSI	CCRYGG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	2 cut(s)	24, 76
BstSCI	CCNGG	2 cut(s)	22, 74
BstUI	CGCG	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	22, 82
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	14
Cfr42I	CCGCGG	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	3 cut(s)	22, 82, 245
CviKI_1	RGCY	3 cut(s)	22, 82, 245
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	2 cut(s)	20, 80
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	22, 74
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	1 cut(s)	182
FaiI	YATR	2 cut(s)	180, 205
FatI	CATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	22, 82
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	14, 30
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	186, 198
Hpy8I	GTNNAC	2 cut(s)	14, 30
HpyAV	CCTTC	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	182
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	5 cut(s)	9, 36, 61, 88, 96
MaeI	CTAG	1 cut(s)	142
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	102, 166
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	27, 205
Mox20I	TGGCCA	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	82
MseI	TTAA	2 cut(s)	46, 121
Msp20I	TGGCCA	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	24, 76
MvaI	CCWGG	2 cut(s)	24, 76
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	22, 74
PspGI	CCWGG	2 cut(s)	22, 74
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	46, 121
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	24, 76
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	19, 64, 73, 247
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SsiI	CCGC	2 cut(s)	171, 173
SspMI	CTAG	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	22, 74
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	46, 121
Tru9I	TTAA	2 cut(s)	46, 121
TscAI	CASTG	1 cut(s)	103
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	21
XspI	CTAG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.