Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002196.1

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1498

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 691 bp

gcctgctagggttttcagaaatgacaatggaactgacgccgaacgcggtggtcgccatcatcagcaaatgacaatggaacttacgccgaacgcggtggtcgccatcatcagcagcaatgtcgacttgaagccggtgttgcaggtcaccgatatcaatcccatcaggcccaccagcttgccagtgtgtttgatgatttccgacggcgtttggtctcatcacatcatggtcgcatttcagctcaatgacctatttgggactgaccaggtcaagaaaggctccgtcgtccagttcaccgactacatttgcaccgatgtccaggaccgcaagcttattgttgtgatgaatatggaaactattgtactggactgggagcttattgggaatccaaaacaatatgtaaagactggtacaactgctcaaactgcattgcctaagaacaatttccagcagtctgcctatggcaacattcatatgattggccaagagcctgtttccaaatgcagaatcccaggccctcttttcatcctgaaaactctgtttccagtatgccaaatgtcagacctacatttcaatctgaaagttcttctgacagtgttccgaatccgagaactacatttcatcctgaaagctcagctcccagtgcagggacagaaccaaaaaattaaattgaggggggggtctaaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

229

Amino Acids

25.72

Weight (kDa)

9.25

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	27 - 120	4.9e-20	Replication factor-A protein 1, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	121
AccII	CGCG	2 cut(s)	46, 93
AciI	CCGC	3 cut(s)	46, 93, 323
AcoI	YGGCCR	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	361, 410
AfiI	CCNNNNNNNGG	2 cut(s)	644, 645
AgsI	TTSAA	2 cut(s)	128, 572
AjnI	CCWGG	3 cut(s)	262, 316, 509
AluBI	AGCT	6 cut(s)	175, 239, 329, 374, 630, 635
AluI	AGCT	6 cut(s)	175, 239, 329, 374, 630, 635
Alw26I	GTCTC	1 cut(s)	217
AoxI	GGCC	3 cut(s)	165, 479, 512
ApeKI	GCWGC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	166, 320, 513
AsuHPI	GGTGA	2 cut(s)	137, 284
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	64, 111, 168
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	264, 318, 511
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	113
BlpI	GCTNAGC	1 cut(s)	631
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	3 cut(s)	264, 318, 511
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	3 cut(s)	166, 320, 513
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	3 cut(s)	264, 318, 511
BmrI	ACTGGG	2 cut(s)	377, 633
BmuI	ACTGGG	2 cut(s)	377, 633
Bpu1102I	GCTNAGC	1 cut(s)	631
BsaBI	GATNNNNATC	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 645
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	7 cut(s)	180, 287, 367, 372, 410, 543, 639
Bse3DI	GCAATG	2 cut(s)	122, 426
Bse8I	GATNNNNATC	1 cut(s)	154
BseBI	CCWGG	3 cut(s)	264, 318, 511
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	2 cut(s)	523, 619
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	644, 645
BseMI	GCAATG	2 cut(s)	122, 426
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	7 cut(s)	180, 287, 367, 372, 410, 543, 639
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	2 cut(s)	46, 93
BshFI	GGCC	3 cut(s)	167, 481, 514
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	269, 661
BslI	CCNNNNNNNGG	2 cut(s)	644, 645
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	269, 661
BsnI	GGCC	3 cut(s)	167, 481, 514
Bso31I	GGTCTC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	631
BspACI	CCGC	3 cut(s)	46, 93, 323
BspANI	GGCC	3 cut(s)	167, 481, 514
BspCNI	CTCAG	1 cut(s)	644
BspFNI	CGCG	2 cut(s)	46, 93
BspLI	GGNNCC	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	122, 426
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	7 cut(s)	180, 287, 367, 372, 410, 543, 639
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	509
BssNI	GRCGYC	1 cut(s)	37
Bst2UI	CCWGG	3 cut(s)	264, 318, 511
Bst4CI	ACNGT	1 cut(s)	593
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	4, 177, 327
BstDEI	CTNAG	3 cut(s)	433, 631, 688
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	523, 619
BstFNI	CGCG	2 cut(s)	46, 93
BstMAI	GTCTC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 99, 137, 423, 641
BstNI	CCWGG	3 cut(s)	264, 318, 511
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	262, 316, 509
BstUI	CGCG	2 cut(s)	46, 93
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	167, 481, 514
BtsCI	GGATG	2 cut(s)	523, 619
BtsIMutI	CAGTG	3 cut(s)	187, 598, 646
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	4, 177, 327
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	166, 320, 513
CseI	GACGC	1 cut(s)	45
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	360, 409
CviAII	CATG	1 cut(s)	224
CviQI	GTAC	2 cut(s)	360, 409
DdeI	CTNAG	3 cut(s)	433, 631, 688
EaeI	YGGCCR	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	513
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	262, 316, 509
EcoRV	GATATC	1 cut(s)	152
FaeI	CATG	1 cut(s)	227
FaiI	YATR	7 cut(s)	225, 348, 397, 460, 472, 474, 548
FaqI	GGGAC	2 cut(s)	269, 661
FatI	CATG	1 cut(s)	223
FauNDI	CATATG	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	510, 606
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	7
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	3 cut(s)	167, 481, 514
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	122
HindII	GTYRAC	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	3 cut(s)	383, 505, 601
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	137, 284
Hpy166II	GTNNAC	2 cut(s)	122, 292
Hpy188I	TCNGA	7 cut(s)	18, 200, 560, 577, 589, 600, 606
Hpy188III	TCNNGA	3 cut(s)	269, 527, 623
Hpy8I	GTNNAC	2 cut(s)	122, 292
Hpy99I	CGWCG	2 cut(s)	204, 285
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	5 cut(s)	140, 307, 426, 502, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 99, 137, 423, 641
HpyF3I	CTNAG	3 cut(s)	433, 631, 688
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	282, 371, 640
Lsp1109I	GCAGC	1 cut(s)	124
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	481
MluCI	AATT	3 cut(s)	440, 661, 666
MluNI	TGGCCA	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	526, 664
Mox20I	TGGCCA	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	481
MseI	TTAA	1 cut(s)	664
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	481
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	264, 318, 511
MvaI	CCWGG	3 cut(s)	264, 318, 511
MvnI	CGCG	2 cut(s)	46, 93
MwoI	GCNNNNNNNGC	5 cut(s)	52, 99, 137, 423, 641
NdeI	CATATG	1 cut(s)	472
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	3 cut(s)	383, 505, 601
PflFI	GACNNNGTC	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	114
Psp6I	CCWGG	3 cut(s)	262, 316, 509
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	262, 316, 509
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	3 cut(s)	166, 320, 513
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	2 cut(s)	361, 410
RsaNI	GTAC	2 cut(s)	360, 409
RseI	CAYNNNNRTG	1 cut(s)	471
SalI	GTCGAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	664
SatI	GCNGC	1 cut(s)	113
Sau96I	GGNCC	3 cut(s)	166, 320, 513
ScrFI	CCNGG	3 cut(s)	264, 318, 511
SexAI	ACCWGGT	1 cut(s)	262
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	440, 661, 666
SsiI	CCGC	3 cut(s)	46, 93, 323
SspMI	CTAG	1 cut(s)	7
StyD4I	CCNGG	3 cut(s)	262, 316, 509
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	440, 661, 666
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	383, 505, 601
Tru1I	TTAA	1 cut(s)	664
Tru9I	TTAA	1 cut(s)	664
TscAI	CASTG	3 cut(s)	187, 598, 646
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	357, 459, 512, 608
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	187, 598, 646
Tth111I	GACNNNGTC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.