Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Reverse (-)

21642129 .. 21642990

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGGAGAGGTATAGCGCTGGCCTTTTGCAGGTGGCCTATCTCCGGCTTGGTAAGCTTCCGGTCGCGGTGATGGAGGAAGAGAAAGGGATCCGATTCGGCCTCGGCGCAGCGATAATTCTTGTTGAGCCTGTCCTCGGCGTCCTTGAGAAGCTTCTCGTAGGAGGTGTGGAGCTCCTCGAGCTGGAGAATGGCCTTGCAGTCTCACTTCTCTTTCTCGGCGGAGTCGCGGCACTCCTGCTCGAGCTCGGCGAGGTGGGCCCGCCACTGGAAGCTGTTGACGTCGGAGGGGCGGGGGAAGAGAACGAGGTCCTTGAGCTTCTTGGAGAGAGTGGGCTTGATGTGGGCGAGATTGGTCGTGGCGGTGTCGACGGCCTCGTGGTCGGGACAGTCGCCGAGGGCGTTGAGGACGAAGTGGGTCTGTGCGACGTCGGAGACGGCGCAGGTCATTGCGGCGATGACTTTGGGGTCGGAGAGGTGGGGCATCTGGTTGAGGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

167

Amino Acids

16.9

Weight (kDa)

4.05

Isoelectric Point (pI)

19.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
AasI	GACNNNNNNGTC	1 cut(s)	467
AatII	GACGTC	2 cut(s)	285, 432
Acc36I	ACCTGC	2 cut(s)	22, 434
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	2 cut(s)	68, 230
AciI	CCGC	7 cut(s)	68, 222, 230, 263, 293, 363, 453
AclWI	GGATC	2 cut(s)	85, 98
AcyI	GRCGYC	3 cut(s)	141, 282, 429
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	5 cut(s)	31, 45, 137, 184, 268
AluBI	AGCT	7 cut(s)	58, 154, 175, 184, 247, 275, 319
AluI	AGCT	7 cut(s)	58, 154, 175, 184, 247, 275, 319
Alw21I	GWGCWC	2 cut(s)	177, 249
Alw26I	GTCTC	2 cut(s)	208, 429
AlwI	GGATC	2 cut(s)	85, 98
Ama87I	CYCGRG	2 cut(s)	179, 242
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	7 cut(s)	22, 36, 100, 193, 259, 373, 498
ApaI	GGGCCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	110
AspLEI	GCGC	3 cut(s)	20, 110, 443
AspS9I	GGNCC	3 cut(s)	259, 260, 310
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	179, 242
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	90
BanII	GRGCYC	3 cut(s)	177, 249, 263
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	177, 249
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	388, 454
BcoDI	GTCTC	2 cut(s)	208, 429
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	2 cut(s)	22, 434
BisI	GCNGC	3 cut(s)	111, 231, 454
BlsI	GCNGC	3 cut(s)	112, 232, 455
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	2 cut(s)	179, 242
BmgT120I	GGNCC	3 cut(s)	259, 260, 310
BmiI	GGNNCC	2 cut(s)	92, 261
BmsI	GCATC	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	2 cut(s)	167, 335
BsaHI	GRCGYC	3 cut(s)	141, 282, 429
BsaJI	CCNNGG	3 cut(s)	103, 136, 396
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 45, 137, 184, 268
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	103, 136, 396
BseLI	CCNNNNNNNGG	5 cut(s)	31, 45, 137, 184, 268
BseMI	GCAATG	1 cut(s)	448
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	122
Bsh1236I	CGCG	2 cut(s)	68, 230
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	7 cut(s)	24, 38, 102, 195, 261, 375, 500
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	177, 249
BsiHKCI	CYCGRG	2 cut(s)	179, 242
BsiSI	CCGG	2 cut(s)	46, 62
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	5 cut(s)	31, 45, 137, 184, 268
BsmAI	GTCTC	2 cut(s)	208, 429
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	7 cut(s)	24, 38, 102, 195, 261, 375, 500
BsoBI	CYCGRG	2 cut(s)	179, 242
Bsp120I	GGGCCC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	177, 249, 263
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	7 cut(s)	68, 222, 230, 263, 293, 363, 453
BspANI	GGCC	7 cut(s)	24, 38, 102, 195, 261, 375, 500
BspFNI	CGCG	2 cut(s)	68, 230
BspLI	GGNNCC	2 cut(s)	92, 261
BspMI	ACCTGC	2 cut(s)	22, 434
BspPI	GGATC	2 cut(s)	85, 98
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	103, 136, 396
BssMI	GATC	1 cut(s)	90
BssNI	GRCGYC	3 cut(s)	141, 282, 429
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	2 cut(s)	75, 294
BstACI	GRCGYC	3 cut(s)	141, 282, 429
BstC8I	GCNNGC	2 cut(s)	22, 263
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstFNI	CGCG	2 cut(s)	68, 230
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	3 cut(s)	20, 110, 443
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	208, 429
BstMBI	GATC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 181, 258
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	2 cut(s)	68, 230
BstV1I	GCAGC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	7 cut(s)	24, 38, 102, 195, 261, 375, 500
BtgZI	GCGATG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	266
BveI	ACCTGC	2 cut(s)	22, 434
Cac8I	GCNNGC	2 cut(s)	22, 263
CfoI	GCGC	3 cut(s)	20, 110, 443
Cfr13I	GGNCC	3 cut(s)	259, 260, 310
CseI	GACGC	1 cut(s)	130
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
Eam1104I	CTCTTC	2 cut(s)	75, 294
EarI	CTCTTC	2 cut(s)	75, 294
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	2 cut(s)	175, 247
Eco147I	AGGCCT	1 cut(s)	500
Eco24I	GRGCYC	3 cut(s)	177, 249, 263
Eco47I	GGWCC	1 cut(s)	310
Eco47III	AGCGCT	1 cut(s)	19
Eco53kI	GAGCTC	2 cut(s)	175, 247
Eco88I	CYCGRG	2 cut(s)	179, 242
EcoICRI	GAGCTC	2 cut(s)	175, 247
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	310
EcoT38I	GRGCYC	3 cut(s)	177, 249, 263
Esp3I	CGTCTC	1 cut(s)	429
FaiI	YATR	1 cut(s)	15
FaqI	GGGAC	1 cut(s)	400
FauI	CCCGC	2 cut(s)	270, 286
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	111, 231, 454
FriOI	GRGCYC	3 cut(s)	177, 249, 263
Fsp4HI	GCNGC	3 cut(s)	111, 231, 454
GlaI	GCGC	3 cut(s)	19, 109, 442
GluI	GCNGC	3 cut(s)	111, 231, 454
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	7 cut(s)	24, 38, 102, 195, 261, 375, 500
HapII	CCGG	2 cut(s)	46, 62
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	3 cut(s)	20, 110, 443
Hin1I	GRCGYC	3 cut(s)	141, 282, 429
Hin6I	GCGC	3 cut(s)	18, 108, 441
HinP1I	GCGC	3 cut(s)	18, 108, 441
HincII	GTYRAC	2 cut(s)	280, 370
HindII	GTYRAC	2 cut(s)	280, 370
HindIII	AAGCTT	2 cut(s)	56, 152
HinfI	GANTC	2 cut(s)	96, 225
HpaII	CCGG	2 cut(s)	46, 62
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	280, 370
Hpy188I	TCNGA	4 cut(s)	95, 287, 434, 473
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	2 cut(s)	280, 370
Hpy99I	CGWCG	4 cut(s)	287, 374, 431, 434
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	282, 429
HpyCH4V	TGCA	2 cut(s)	31, 200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 181, 258
HpySE526I	ACGT	2 cut(s)	282, 429
Hsp92I	GRCGYC	3 cut(s)	141, 282, 429
HspAI	GCGC	3 cut(s)	18, 108, 441
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	172, 180
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	2 cut(s)	282, 429
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	92, 311
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	3 cut(s)	177, 249, 263
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	3 cut(s)	265, 412, 451
MspI	CCGG	2 cut(s)	46, 62
MvnI	CGCG	2 cut(s)	68, 230
MwoI	GCNNNNNNNGC	3 cut(s)	55, 181, 258
NdeII	GATC	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	92, 261
NmeAIII	GCCGAG	5 cut(s)	84, 117, 198, 228, 421
PaeR7I	CTCGAG	2 cut(s)	179, 242
PaqCI	CACCTGC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 375, 399
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	112, 232, 455
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	2 cut(s)	177, 249
Psp5II	RGGWCCY	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	92, 261
PspOMI	GGGCCC	1 cut(s)	259
PspPI	GGNCC	3 cut(s)	259, 260, 310
PspPPI	RGGWCCY	1 cut(s)	310
PspXI	VCTCGAGB	2 cut(s)	179, 242
PsuI	RGATCY	1 cut(s)	90
SacI	GAGCTC	2 cut(s)	177, 249
SalI	GTCGAC	1 cut(s)	368
SatI	GCNGC	3 cut(s)	111, 231, 454
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	3 cut(s)	259, 260, 310
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	3 cut(s)	177, 249, 263
SfaNI	GCATC	1 cut(s)	493
Sfr274I	CTCGAG	2 cut(s)	179, 242
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	2 cut(s)	179, 242
SmlI	CTYRAG	4 cut(s)	146, 179, 242, 314
SmoI	CTYRAG	4 cut(s)	146, 179, 242, 314
Sse9I	AATT	1 cut(s)	117
SseBI	AGGCCT	1 cut(s)	500
SsiI	CCGC	7 cut(s)	68, 222, 230, 263, 293, 363, 453
SstI	GAGCTC	2 cut(s)	177, 249
StuI	AGGCCT	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	285, 432
TaqI	TCGA	3 cut(s)	180, 243, 369
TasI	AATT	1 cut(s)	117
TauI	GCSGC	2 cut(s)	233, 456
TfiI	GAWTC	1 cut(s)	96
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	110
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	29
XhoI	CTCGAG	2 cut(s)	179, 242
XmiI	GTMKAC	1 cut(s)	369
ZraI	GACGTC	2 cut(s)	283, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.