Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Reverse (-)

8316176 .. 8317963

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGACGATATGCACCATGAGAGTGATGACGGTTATGAATCCACAGAGAGTGGCGATGAAGAAGCAATGAACTACGATGACGATCTTCTAGTAGATGATAAAGTCGATGACTTTGGTCAGTGTAGGTCTCCACAGGAAAATTATATTGTTTTGGAAGAAGAAGAAATTGCAAAACTTCAGGATAATTATATTGCAGAAGTCTCTACCGTTCTCTCCATATCCAAATCCGATGCATGCTTACTGCTCCCTCACTTCCATTGGAGGGTTGATGAACTAAAGGATGAATGGTTTGCCAATGAAGATAAAGTTAGAGAAAAGGTCGGTTTGTTGAAGAAACCTATAGTTGAACATAATGCTAGGGCAAATCTAAGAATTCCTTGCGGAATTTGTTTTGAAGAGTACAACTTTGATCGTTGTATTTTGTCAGCCTCTTGTGGCCATCCTTTTTGTCGAGATTGCTGGGCAGGTTATATTAGCAAAACAATATGTGACGGTGGTCCGGCGTGTTTGAGGCTAAGGTGTCCTGAACCATCATGTAGTGCAGCAGTTGGTCCTGATTTGATCCAAAAGGTATTGTTGAACTCAAACCGAGAAGCTGAGCATGGCAAGTACAAGACCTATCTGTTAAGATCTTACGTCGAAGATCAGAGGAAGATCAAGTGGTGTCCTGCCCCGGATTGTAACTGCGCAATTCAGTTTGATACTTTGGGTGGAATGGTGTCATATGATGTTTCATGTCTTTGCTCGCATAGCTGTTGCTGGAATTGTACTGAGGAGAATCATCGTCCTGTGGATTGCGAAACTGTGGGGAAGTGGATTTTGAAGAATAAGGATGATTCTCAAAATGCGCAGTGGATACTGGTTAATTCCAAGCCTTGCCCCCAGTGCAAAAGACCAATTGAGAAGAACCAAGGCTGTAATCACATGACGTGCAGTGCTCCCTGTGGGTACCAGTTTTGCTGGTTATGCCTCGGGCCACATAAAAATTACAGAGGTTGCTATTGCAATAGTTATAGGCCGGGGTCAGTTGATAATAATCCCGAGACATCTAGGAATATGAATGAGACGGCAAGGAAGAGGGCAAAGAAGTATTTAGAGAGATATATTCATTACTATGAACGCTGGGAAAACAATGGAAGATCAAAGGGAAAAGCTATTAAGGAGTTTGATAAGGTGAAGACCGAGCACATTAAGCAACTTGGAGAGATACATGGAAACACAAAAGAGCATGAATACGATTTTATCATAGAGGCCTGGCAACAGATTATTGAGTGCAGGCAAGTATTGCGATGGACTTATGCATATGGCTACTACATGCCTGAGGATGCTTATGCTAAGAAGCACCTATTCGAGTGCTTGCAAGGCCATGCTGAGTTTAGCCTGGAAAGGCTTCACAATTGCGCTGAGAGCGAACTGCAACAGTTTCTGGTCTTATCACCATCAGCAGCTTCTGACACTTTCAAAGAGTTTAAAACAAAACTCGTGGGCCTGACAAAGGTTACCGGAACTTATTTCAAAAGGTTGGTTACTGCATTGGAGGAGAGGCTTCCGGAGACGAGCCGATATGGAGCTGGGGCTGCTTATGAGGAGACTGATTGGACATGTGACCAATGTACCTATATCAATGTAGGGTCTGCCGTTACCTGTGCAGCATGTTTTGAGCAAAATCCGCAAGGTTACTGGTCTTGTGACCGCTGTACGATTTTCAATCCGGTGACTACAACCAGGTGTCGGATGTGTGATGATGCCGATGCTGATCAGGGTGGGGAAGTTTTGCCTATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

595

Amino Acids

68.33

Weight (kDa)

5.36

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARIH2_N	PF26000	54 - 94	1.7e-06	E3 ubiquitin-protein ligase ARIH2, N-terminal UBA domain
UBA_ARI1	PF21235	59 - 97	5.4e-09	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR	PF01485	203 - 266	4.6e-12	IBR domain, a half RING-finger domain
IBR_2	PF22605	286 - 327	6.3e-10	IBR domain
IBR	PF01485	289 - 329	9e-06	IBR domain, a half RING-finger domain
IBR_1	PF22191	289 - 328	1.7e-10	IBR domain
Ariadne	PF19422	366 - 518	1.9e-07	Ariadne domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	688, 849
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	948
AccB1I	GGYRCC	1 cut(s)	948
AccIII	TCCGGA	1 cut(s)	1549
AciI	CCGC	3 cut(s)	381, 1670, 1693
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	372, 384
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	6 cut(s)	401, 611, 769, 950, 1615, 1699
AfiI	CCNNNNNNNGG	3 cut(s)	262, 1495, 1731
AflIII	ACRYGT	1 cut(s)	1601
AgsI	TTSAA	8 cut(s)	331, 347, 395, 580, 823, 1462, 1516, 1708
AjiI	CACGTC	1 cut(s)	930
AjnI	CCWGG	3 cut(s)	1253, 1380, 1724
AluBI	AGCT	5 cut(s)	596, 753, 1154, 1448, 1571
AluI	AGCT	5 cut(s)	596, 753, 1154, 1448, 1571
Alw21I	GWGCWC	2 cut(s)	940, 1188
Alw26I	GTCTC	6 cut(s)	132, 205, 1037, 1058, 1547, 1583
AlwI	GGATC	1 cut(s)	556
AlwNI	CAGNNNCTG	2 cut(s)	1426, 1451
Ama87I	CYCGRG	2 cut(s)	971, 1040
Aor13HI	TCCGGA	1 cut(s)	1549
AoxI	GGCC	6 cut(s)	436, 974, 1016, 1251, 1363, 1486
ApeKI	GCWGC	4 cut(s)	542, 1445, 1577, 1649
ApoI	RAATTY	2 cut(s)	372, 384
Asp700I	GAANNNNTTC	1 cut(s)	1389
Asp718I	GGTACC	1 cut(s)	948
AspLEI	GCGC	3 cut(s)	689, 850, 1403
AspS9I	GGNCC	4 cut(s)	497, 551, 974, 1486
AsuC2I	CCSGG	2 cut(s)	674, 1020
AsuHPI	GGTGA	3 cut(s)	1186, 1428, 1726
AvaI	CYCGRG	2 cut(s)	971, 1040
AvaII	GGWCC	2 cut(s)	497, 551
AxyI	CCTNAGG	1 cut(s)	1320
BaeI	ACNNNNGTAYC	2 cut(s)	1597, 1630
BalI	TGGCCA	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	948
BauI	CACGAG	1 cut(s)	1481
BbsI	GAAGAC	1 cut(s)	1184
Bbv12I	GWGCWC	2 cut(s)	940, 1188
BbvI	GCAGC	4 cut(s)	554, 1457, 1564, 1661
BccI	CCATC	4 cut(s)	447, 538, 1284, 1447
BceAI	ACGGC	2 cut(s)	1083, 1622
BciT130I	CCWGG	3 cut(s)	1255, 1382, 1726
BciVI	GTATCC	1 cut(s)	849
BclI	TGATCA	1 cut(s)	1756
BcnI	CCSGG	2 cut(s)	674, 1020
BcoDI	GTCTC	6 cut(s)	132, 205, 1037, 1058, 1547, 1583
BfaI	CTAG	3 cut(s)	89, 357, 1050
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	849
BglII	AGATCT	1 cut(s)	629
BisI	GCNGC	4 cut(s)	543, 1446, 1578, 1650
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	4 cut(s)	544, 1447, 1579, 1651
Bme1390I	CCNGG	5 cut(s)	674, 1020, 1255, 1382, 1726
Bme18I	GGWCC	2 cut(s)	497, 551
BmeT110I	CYCGRG	2 cut(s)	971, 1040
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	4 cut(s)	497, 551, 974, 1486
BmiI	GGNNCC	1 cut(s)	950
BmrFI	CCNGG	5 cut(s)	674, 1020, 1255, 1382, 1726
BmrI	ACTGGG	1 cut(s)	877
BmsI	GCATC	4 cut(s)	220, 1315, 1735, 1741
BmuI	ACTGGG	1 cut(s)	877
BoxI	GACNNNNGTC	2 cut(s)	114, 495
BpiI	GAAGAC	1 cut(s)	1184
Bpu10I	CCTNAGC	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	674, 1020
BsaBI	GATNNNNATC	3 cut(s)	81, 1035, 1755
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	672, 910, 970, 1019
BsaWI	WCCGGW	3 cut(s)	1502, 1549, 1711
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 1495, 1731
Bse1I	ACTGG	4 cut(s)	864, 883, 952, 1685
Bse21I	CCTNAGG	1 cut(s)	1320
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	3 cut(s)	81, 1035, 1755
BseAI	TCCGGA	1 cut(s)	1549
BseBI	CCWGG	3 cut(s)	1255, 1382, 1726
BseDI	CCNNGG	4 cut(s)	672, 910, 970, 1019
BseGI	GGATG	5 cut(s)	286, 439, 838, 1330, 1740
BseJI	GATNNNNATC	3 cut(s)	81, 1035, 1755
BseLI	CCNNNNNNNGG	3 cut(s)	262, 1495, 1731
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	5 cut(s)	588, 762, 1311, 1362, 1395
BseNI	ACTGG	4 cut(s)	864, 883, 952, 1685
BseRI	GAGGAG	3 cut(s)	788, 1553, 1601
BseXI	GCAGC	4 cut(s)	554, 1457, 1564, 1661
BseYI	CCCAGC	3 cut(s)	459, 1122, 1571
BsgI	GTGCAG	4 cut(s)	561, 952, 1294, 1668
BshFI	GGCC	6 cut(s)	438, 976, 1018, 1253, 1365, 1488
BshNI	GGYRCC	1 cut(s)	948
BsiHKAI	GWGCWC	2 cut(s)	940, 1188
BsiHKCI	CYCGRG	2 cut(s)	971, 1040
BsiSI	CCGG	6 cut(s)	500, 674, 1019, 1503, 1550, 1712
BslI	CCNNNNNNNGG	3 cut(s)	262, 1495, 1731
BsmAI	GTCTC	6 cut(s)	132, 205, 1037, 1058, 1547, 1583
BsmBI	CGTCTC	2 cut(s)	1058, 1547
BsnI	GGCC	6 cut(s)	438, 976, 1018, 1253, 1365, 1488
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	2 cut(s)	971, 1040
Bsp1286I	GDGCHC	2 cut(s)	940, 1188
Bsp13I	TCCGGA	1 cut(s)	1549
Bsp143I	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	3 cut(s)	381, 1670, 1693
BspANI	GGCC	6 cut(s)	438, 976, 1018, 1253, 1365, 1488
BspCNI	CTCAG	5 cut(s)	589, 763, 1312, 1363, 1396
BspEI	TCCGGA	1 cut(s)	1549
BspLI	GGNNCC	1 cut(s)	950
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	948
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	4 cut(s)	864, 883, 952, 1685
BssECI	CCNNGG	4 cut(s)	672, 910, 970, 1019
BssMI	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
BssSI	CACGAG	1 cut(s)	1481
BssT1I	CCWWGG	1 cut(s)	910
Bst2BI	CACGAG	1 cut(s)	1481
Bst2UI	CCWGG	3 cut(s)	1255, 1382, 1726
Bst4CI	ACNGT	5 cut(s)	32, 208, 494, 805, 1422
Bst6I	CTCTTC	2 cut(s)	390, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	1285
BstC8I	GCNNGC	4 cut(s)	235, 746, 1277, 1358
BstDEI	CTNAG	8 cut(s)	368, 515, 597, 771, 1320, 1335, 1371, 1404
BstEII	GGTNACC	1 cut(s)	1498
BstENI	CCTNNNNNAGG	1 cut(s)	1493
BstF5I	GGATG	5 cut(s)	286, 439, 838, 1330, 1740
BstHHI	GCGC	3 cut(s)	689, 850, 1403
BstKTI	GATC	8 cut(s)	85, 412, 564, 632, 646, 657, 1142, 1759
BstMAI	GTCTC	6 cut(s)	132, 205, 1037, 1058, 1547, 1583
BstMBI	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
BstMWI	GCNNNNNNNGC	9 cut(s)	750, 885, 966, 1192, 1285, 1362, 1407, 1577, 1669
BstNI	CCWGG	3 cut(s)	1255, 1382, 1726
BstNSI	RCATGY	4 cut(s)	237, 1318, 1605, 1656
BstPAI	GACNNNNGTC	2 cut(s)	114, 495
BstPI	GGTNACC	1 cut(s)	1498
BstSCI	CCNGG	5 cut(s)	672, 1018, 1253, 1380, 1724
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	554, 1457, 1564, 1661
BstV2I	GAAGAC	1 cut(s)	1184
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu36I	CCTNAGG	1 cut(s)	1320
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	6 cut(s)	438, 976, 1018, 1253, 1365, 1488
BtgZI	GCGATG	2 cut(s)	69, 1303
BtrI	CACGTC	1 cut(s)	930
BtsCI	GGATG	5 cut(s)	286, 439, 838, 1330, 1740
BtsI	GCAGTG	2 cut(s)	857, 940
BtsIMutI	CAGTG	4 cut(s)	125, 857, 890, 940
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	4 cut(s)	235, 746, 1277, 1358
CaiI	CAGNNNCTG	2 cut(s)	1426, 1451
CfoI	GCGC	3 cut(s)	689, 850, 1403
Cfr13I	GGNCC	4 cut(s)	497, 551, 974, 1486
CsiI	ACCWGGT	1 cut(s)	1724
Csp6I	GTAC	6 cut(s)	400, 610, 768, 949, 1614, 1698
CspCI	CAANNNNNGTGG	2 cut(s)	1464, 1499
CviQI	GTAC	6 cut(s)	400, 610, 768, 949, 1614, 1698
DdeI	CTNAG	8 cut(s)	368, 515, 597, 771, 1320, 1335, 1371, 1404
DpnI	GATC	8 cut(s)	84, 411, 563, 631, 645, 656, 1141, 1758
DpnII	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
DraI	TTTAAA	1 cut(s)	1471
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	390, 1070
EarI	CTCTTC	2 cut(s)	390, 1070
Eco130I	CCWWGG	1 cut(s)	910
Eco147I	AGGCCT	1 cut(s)	1253
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	497, 551
Eco57I	CTGAAG	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	1320
Eco88I	CYCGRG	2 cut(s)	971, 1040
Eco91I	GGTNACC	1 cut(s)	1498
EcoNI	CCTNNNNNAGG	1 cut(s)	1493
EcoO65I	GGTNACC	1 cut(s)	1498
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	1253, 1380, 1724
EcoT14I	CCWWGG	1 cut(s)	910
EcoT22I	ATGCAT	2 cut(s)	235, 1303
ErhI	CCWWGG	1 cut(s)	910
Esp3I	CGTCTC	2 cut(s)	1058, 1547
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FauNDI	CATATG	2 cut(s)	724, 1303
FbaI	TGATCA	1 cut(s)	1756
Fnu4HI	GCNGC	4 cut(s)	543, 1446, 1578, 1650
FokI	GGATG	5 cut(s)	293, 426, 845, 1337, 1747
Fsp4HI	GCNGC	4 cut(s)	543, 1446, 1578, 1650
FspBI	CTAG	3 cut(s)	89, 357, 1050
FspI	TGCGCA	2 cut(s)	688, 849
GlaI	GCGC	3 cut(s)	688, 849, 1402
GluI	GCNGC	4 cut(s)	543, 1446, 1578, 1650
GsaI	CCCAGC	3 cut(s)	463, 1126, 1575
HaeIII	GGCC	6 cut(s)	438, 976, 1018, 1253, 1365, 1488
HapII	CCGG	6 cut(s)	500, 674, 1019, 1503, 1550, 1712
HhaI	GCGC	3 cut(s)	689, 850, 1403
Hin6I	GCGC	3 cut(s)	687, 848, 1401
HinP1I	GCGC	3 cut(s)	687, 848, 1401
HinfI	GANTC	3 cut(s)	38, 778, 836
HpaII	CCGG	6 cut(s)	500, 674, 1019, 1503, 1550, 1712
HphI	GGTGA	3 cut(s)	1186, 1428, 1726
Hpy188I	TCNGA	4 cut(s)	229, 648, 1453, 1734
Hpy188III	TCNNGA	6 cut(s)	179, 452, 524, 554, 1040, 1550
Hpy99I	CGWCG	1 cut(s)	641
HpyCH4III	ACNGT	5 cut(s)	32, 208, 494, 805, 1422
HpyCH4IV	ACGT	2 cut(s)	636, 929
HpyF10VI	GCNNNNNNNGC	9 cut(s)	750, 885, 966, 1192, 1285, 1362, 1407, 1577, 1669
HpyF3I	CTNAG	8 cut(s)	368, 515, 597, 771, 1320, 1335, 1371, 1404
HpySE526I	ACGT	2 cut(s)	636, 929
HspAI	GCGC	3 cut(s)	687, 848, 1401
Kpn2I	TCCGGA	1 cut(s)	1549
KpnI	GGTACC	1 cut(s)	952
Ksp22I	TGATCA	1 cut(s)	1756
Kzo9I	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
LmnI	GCTCC	3 cut(s)	249, 943, 1568
Lsp1109I	GCAGC	4 cut(s)	554, 1457, 1564, 1661
LweI	GCATC	4 cut(s)	220, 1315, 1735, 1741
MabI	ACCWGGT	1 cut(s)	1724
MaeI	CTAG	3 cut(s)	89, 357, 1050
MaeII	ACGT	2 cut(s)	636, 929
MaeIII	GTNAC	9 cut(s)	488, 680, 1498, 1525, 1604, 1639, 1676, 1688, 1714
MalI	GATC	8 cut(s)	84, 411, 563, 631, 645, 656, 1141, 1758
MboI	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
MfeI	CAATTG	2 cut(s)	897, 1396
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	2 cut(s)	940, 1188
MlsI	TGGCCA	1 cut(s)	438
MluNI	TGGCCA	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	1712
Mox20I	TGGCCA	1 cut(s)	438
Mph1103I	ATGCAT	2 cut(s)	235, 1303
MroI	TCCGGA	1 cut(s)	1549
MroXI	GAANNNNTTC	1 cut(s)	1389
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	5 cut(s)	626, 864, 1158, 1191, 1470
MslI	CAYNNNNRTG	2 cut(s)	21, 1113
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	1695
MspI	CCGG	6 cut(s)	500, 674, 1019, 1503, 1550, 1712
MspR9I	CCNGG	5 cut(s)	674, 1020, 1255, 1382, 1726
MunI	CAATTG	2 cut(s)	897, 1396
MvaI	CCWGG	3 cut(s)	1255, 1382, 1726
MwoI	GCNNNNNNNGC	9 cut(s)	750, 885, 966, 1192, 1285, 1362, 1407, 1577, 1669
NciI	CCSGG	2 cut(s)	674, 1020
NdeI	CATATG	2 cut(s)	724, 1303
NdeII	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
NlaIV	GGNNCC	1 cut(s)	950
NmuCI	GTSAC	4 cut(s)	488, 1604, 1688, 1714
NsbI	TGCGCA	2 cut(s)	688, 849
NsiI	ATGCAT	2 cut(s)	235, 1303
NspI	RCATGY	4 cut(s)	237, 1318, 1605, 1656
PaeI	GCATGC	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	1253
PciI	ACATGT	1 cut(s)	1601
PdmI	GAANNNNTTC	1 cut(s)	1389
PfeI	GAWTC	3 cut(s)	38, 778, 836
PkrI	GCNGC	4 cut(s)	544, 1447, 1579, 1651
PscI	ACATGT	1 cut(s)	1601
PshAI	GACNNNNGTC	2 cut(s)	114, 495
Psp6I	CCWGG	3 cut(s)	1253, 1380, 1724
PspEI	GGTNACC	1 cut(s)	1498
PspFI	CCCAGC	3 cut(s)	459, 1122, 1571
PspGI	CCWGG	3 cut(s)	1253, 1380, 1724
PspN4I	GGNNCC	1 cut(s)	950
PspPI	GGNCC	4 cut(s)	497, 551, 974, 1486
PstNI	CAGNNNCTG	2 cut(s)	1426, 1451
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	6 cut(s)	401, 611, 769, 950, 1615, 1699
RsaNI	GTAC	6 cut(s)	400, 610, 768, 949, 1614, 1698
RseI	CAYNNNNRTG	2 cut(s)	21, 1113
SaqAI	TTAA	5 cut(s)	626, 864, 1158, 1191, 1470
SatI	GCNGC	4 cut(s)	543, 1446, 1578, 1650
Sau3AI	GATC	8 cut(s)	82, 409, 561, 629, 643, 654, 1139, 1756
Sau96I	GGNCC	4 cut(s)	497, 551, 974, 1486
ScrFI	CCNGG	5 cut(s)	674, 1020, 1255, 1382, 1726
SduI	GDGCHC	2 cut(s)	940, 1188
SexAI	ACCWGGT	1 cut(s)	1724
SfaNI	GCATC	4 cut(s)	220, 1315, 1735, 1741
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	2 cut(s)	497, 551
SmiMI	CAYNNNNRTG	2 cut(s)	21, 1113
SphI	GCATGC	1 cut(s)	237
SseBI	AGGCCT	1 cut(s)	1253
SsiI	CCGC	3 cut(s)	381, 1670, 1693
SspMI	CTAG	3 cut(s)	89, 357, 1050
StuI	AGGCCT	1 cut(s)	1253
StyD4I	CCNGG	5 cut(s)	672, 1018, 1253, 1380, 1724
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	5 cut(s)	32, 208, 494, 805, 1422
TaiI	ACGT	2 cut(s)	639, 932
TaqI	TCGA	4 cut(s)	105, 451, 639, 1350
TaqII	GACCGA	1 cut(s)	1196
TatI	WGTACW	3 cut(s)	399, 609, 767
TfiI	GAWTC	3 cut(s)	38, 778, 836
Tru1I	TTAA	5 cut(s)	626, 864, 1158, 1191, 1470
Tru9I	TTAA	5 cut(s)	626, 864, 1158, 1191, 1470
TscAI	CASTG	4 cut(s)	125, 857, 890, 940
TseFI	GTSAC	4 cut(s)	488, 1604, 1688, 1714
TseI	GCWGC	4 cut(s)	542, 1445, 1577, 1649
Tsp45I	GTSAC	4 cut(s)	488, 1604, 1688, 1714
TspRI	CASTG	4 cut(s)	125, 857, 890, 940
VpaK11BI	GGWCC	2 cut(s)	497, 551
XagI	CCTNNNNNAGG	1 cut(s)	1493
XapI	RAATTY	2 cut(s)	372, 384
XceI	RCATGY	4 cut(s)	237, 1318, 1605, 1656
XmnI	GAANNNNTTC	1 cut(s)	1389
XspI	CTAG	3 cut(s)	89, 357, 1050
Zsp2I	ATGCAT	2 cut(s)	235, 1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.