Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000029349 |
| rosa_multiflora | Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00315470 |
| rosa_rugosa | Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800 |
| rosa_samantha | Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600 |
| rosa_wichuraiana | Rw1G011950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 139 |
| AfaI | GTAC | 2 cut(s) | 21, 70 |
| AgsI | TTSAA | 1 cut(s) | 233 |
| AjnI | CCWGG | 1 cut(s) | 170 |
| AluBI | AGCT | 3 cut(s) | 34, 243, 291 |
| AluI | AGCT | 3 cut(s) | 34, 243, 291 |
| Alw26I | GTCTC | 1 cut(s) | 262 |
| AoxI | GGCC | 2 cut(s) | 139, 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 101 |
| AspS9I | GGNCC | 1 cut(s) | 174 |
| BalI | TGGCCA | 1 cut(s) | 141 |
| BciT130I | CCWGG | 1 cut(s) | 172 |
| BcoDI | GTCTC | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 1 cut(s) | 172 |
| BmgT120I | GGNCC | 1 cut(s) | 174 |
| BmiI | GGNNCC | 1 cut(s) | 313 |
| BmrFI | CCNGG | 1 cut(s) | 172 |
| BmrI | ACTGGG | 1 cut(s) | 37 |
| BmuI | ACTGGG | 1 cut(s) | 37 |
| BsaI | GGTCTC | 1 cut(s) | 262 |
| BsaJI | CCNNGG | 1 cut(s) | 170 |
| Bse1I | ACTGG | 3 cut(s) | 27, 32, 204 |
| Bse3DI | GCAATG | 1 cut(s) | 86 |
| BseBI | CCWGG | 1 cut(s) | 172 |
| BseDI | CCNNGG | 1 cut(s) | 170 |
| BseGI | GGATG | 2 cut(s) | 184, 280 |
| BseMI | GCAATG | 1 cut(s) | 86 |
| BseNI | ACTGG | 3 cut(s) | 27, 32, 204 |
| BseYI | CCCAGC | 1 cut(s) | 299 |
| BshFI | GGCC | 2 cut(s) | 141, 175 |
| BslFI | GGGAC | 1 cut(s) | 320 |
| BsmAI | GTCTC | 1 cut(s) | 262 |
| BsmFI | GGGAC | 1 cut(s) | 320 |
| BsnI | GGCC | 2 cut(s) | 141, 175 |
| Bso31I | GGTCTC | 1 cut(s) | 262 |
| BspANI | GGCC | 2 cut(s) | 141, 175 |
| BspLI | GGNNCC | 1 cut(s) | 313 |
| BspQI | GCTCTTC | 1 cut(s) | 250 |
| BspTNI | GGTCTC | 1 cut(s) | 262 |
| BsrDI | GCAATG | 1 cut(s) | 86 |
| BsrI | ACTGG | 3 cut(s) | 27, 32, 204 |
| BssECI | CCNNGG | 1 cut(s) | 170 |
| Bst2UI | CCWGG | 1 cut(s) | 172 |
| Bst4CI | ACNGT | 1 cut(s) | 254 |
| Bst6I | CTCTTC | 1 cut(s) | 250 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstF5I | GGATG | 2 cut(s) | 184, 280 |
| BstMAI | GTCTC | 1 cut(s) | 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 83 |
| BstNI | CCWGG | 1 cut(s) | 172 |
| BstSCI | CCNGG | 1 cut(s) | 170 |
| BsuRI | GGCC | 2 cut(s) | 141, 175 |
| BtsCI | GGATG | 2 cut(s) | 184, 280 |
| BtsIMutI | CAGTG | 1 cut(s) | 259 |
| Cfr13I | GGNCC | 1 cut(s) | 174 |
| Csp6I | GTAC | 2 cut(s) | 20, 69 |
| CviJI | RGCY | 6 cut(s) | 34, 141, 148, 175, 243, 291 |
| CviKI_1 | RGCY | 6 cut(s) | 34, 141, 148, 175, 243, 291 |
| CviQI | GTAC | 2 cut(s) | 20, 69 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| EaeI | YGGCCR | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 1 cut(s) | 250 |
| EarI | CTCTTC | 1 cut(s) | 250 |
| Eco31I | GGTCTC | 1 cut(s) | 262 |
| EcoO109I | RGGNCCY | 1 cut(s) | 174 |
| EcoRII | CCWGG | 1 cut(s) | 170 |
| FaiI | YATR | 6 cut(s) | 8, 57, 120, 132, 134, 209 |
| FaqI | GGGAC | 1 cut(s) | 320 |
| FauNDI | CATATG | 1 cut(s) | 132 |
| FokI | GGATG | 2 cut(s) | 171, 267 |
| GsaI | CCCAGC | 1 cut(s) | 303 |
| HaeIII | GGCC | 2 cut(s) | 141, 175 |
| HinfI | GANTC | 3 cut(s) | 43, 166, 262 |
| Hpy188I | TCNGA | 5 cut(s) | 221, 238, 250, 261, 267 |
| Hpy188III | TCNNGA | 2 cut(s) | 188, 284 |
| HpyCH4III | ACNGT | 1 cut(s) | 254 |
| HpyCH4V | TGCA | 1 cut(s) | 86 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 83 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| LguI | GCTCTTC | 1 cut(s) | 250 |
| LmnI | GCTCC | 2 cut(s) | 31, 301 |
| MboII | GAAGA | 1 cut(s) | 237 |
| MlsI | TGGCCA | 1 cut(s) | 141 |
| MluCI | AATT | 3 cut(s) | 100, 320, 325 |
| MluNI | TGGCCA | 1 cut(s) | 141 |
| MnlI | CCTC | 1 cut(s) | 187 |
| Mox20I | TGGCCA | 1 cut(s) | 141 |
| MroXI | GAANNNNTTC | 1 cut(s) | 101 |
| MscI | TGGCCA | 1 cut(s) | 141 |
| MseI | TTAA | 1 cut(s) | 323 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| Msp20I | TGGCCA | 1 cut(s) | 141 |
| MspR9I | CCNGG | 1 cut(s) | 172 |
| MvaI | CCWGG | 1 cut(s) | 172 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 83 |
| NdeI | CATATG | 1 cut(s) | 132 |
| NlaIV | GGNNCC | 1 cut(s) | 313 |
| PciSI | GCTCTTC | 1 cut(s) | 250 |
| PdmI | GAANNNNTTC | 1 cut(s) | 101 |
| PfeI | GAWTC | 3 cut(s) | 43, 166, 262 |
| Psp6I | CCWGG | 1 cut(s) | 170 |
| PspFI | CCCAGC | 1 cut(s) | 299 |
| PspGI | CCWGG | 1 cut(s) | 170 |
| PspN4I | GGNNCC | 1 cut(s) | 313 |
| PspPI | GGNCC | 1 cut(s) | 174 |
| RsaI | GTAC | 2 cut(s) | 21, 70 |
| RsaNI | GTAC | 2 cut(s) | 20, 69 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| SapI | GCTCTTC | 1 cut(s) | 250 |
| SaqAI | TTAA | 1 cut(s) | 323 |
| Sau96I | GGNCC | 1 cut(s) | 174 |
| ScrFI | CCNGG | 1 cut(s) | 172 |
| SetI | ASST | 5 cut(s) | 36, 226, 245, 274, 293 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| Sse9I | AATT | 3 cut(s) | 100, 320, 325 |
| StyD4I | CCNGG | 1 cut(s) | 170 |
| TaaI | ACNGT | 1 cut(s) | 254 |
| TasI | AATT | 3 cut(s) | 100, 320, 325 |
| TatI | WGTACW | 1 cut(s) | 19 |
| TfiI | GAWTC | 3 cut(s) | 43, 166, 262 |
| Tru1I | TTAA | 1 cut(s) | 323 |
| Tru9I | TTAA | 1 cut(s) | 323 |
| TscAI | CASTG | 1 cut(s) | 259 |
| TspDTI | ATGAA | 4 cut(s) | 17, 119, 173, 269 |
| TspGWI | ACGGA | 1 cut(s) | 324 |
| TspRI | CASTG | 1 cut(s) | 259 |
| XmnI | GAANNNNTTC | 1 cut(s) | 101 |