Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Reverse (-)

33170101 .. 33171153

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG187300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGACGGTGGAACTGACGCGGGACGCGGTAGTCAATATCATCGGTGGTAATGTCAACTTGAAGCCGCTGATGCAGGTCACCGATATCATTCCCGTCGAGATCCCCCTGAGTTACCGGAGAGGCTCCATTGTCCGGCTCACCGACTACGTTTGCTCTGAAGTCAATGACCACAAGATTATTGTTGTGATGAATATGGAAACTATTGTACCGGACTCGATGCTTATTGGGAATCCAAGAGAATATGTTCAGTCTGATACAACTGCTCAAACTGCATTGCCTAAGAACAATTTCCAGCAGTCTGCCCATGGCAACATTGATGAGATCCATAGAGACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

112

Amino Acids

12.55

Weight (kDa)

4.97

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	39 - 69	2.8e-06	Replication factor-A protein 1, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	64
AccII	CGCG	2 cut(s)	19, 26
AciI	CCGC	3 cut(s)	19, 26, 65
AclWI	GGATC	2 cut(s)	94, 316
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	94, 316
Asp700I	GAANNNNTTC	2 cut(s)	243, 287
AsuHPI	GGTGA	2 cut(s)	70, 130
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BcoDI	GTCTC	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	2 cut(s)	60, 207
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	114, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	98
Bsh1236I	CGCG	2 cut(s)	19, 26
BsiSI	CCGG	3 cut(s)	115, 133, 209
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	99, 321
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	3 cut(s)	19, 26, 65
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	19, 26
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	94, 316
BsrDI	GCAATG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	99, 321
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	107, 279
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	76
BstFNI	CGCG	2 cut(s)	19, 26
BstKTI	GATC	2 cut(s)	102, 324
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	99, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 269
BstPI	GGTNACC	1 cut(s)	76
BstUI	CGCG	2 cut(s)	19, 26
BstX2I	RGATCY	2 cut(s)	99, 321
BstYI	RGATCY	2 cut(s)	99, 321
BtgI	CCRYGG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	64
CseI	GACGC	2 cut(s)	25, 32
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	3 cut(s)	64, 123, 136
CviKI_1	RGCY	3 cut(s)	64, 123, 136
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	107, 279
DpnI	GATC	2 cut(s)	101, 323
DpnII	GATC	2 cut(s)	99, 321
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	308
FaiI	YATR	4 cut(s)	194, 243, 306, 327
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HapII	CCGG	3 cut(s)	115, 133, 209
HgaI	GACGC	2 cut(s)	25, 32
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	212, 229
HpaII	CCGG	3 cut(s)	115, 133, 209
HphI	GGTGA	2 cut(s)	70, 130
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	157, 253
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	73, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 269
HpyF3I	CTNAG	2 cut(s)	107, 279
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	99, 321
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	59, 119, 128, 146, 222, 305
LweI	GCATC	2 cut(s)	60, 207
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	76, 110
MalI	GATC	2 cut(s)	101, 323
MboI	GATC	2 cut(s)	99, 321
MflI	RGATCY	2 cut(s)	99, 321
MluCI	AATT	2 cut(s)	286, 334
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	243, 287
MseI	TTAA	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	3 cut(s)	115, 133, 209
MvnI	CGCG	2 cut(s)	19, 26
MwoI	GCNNNNNNNGC	2 cut(s)	70, 269
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	2 cut(s)	99, 321
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	76
PdmI	GAANNNNTTC	2 cut(s)	243, 287
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	99, 321
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	337
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	99, 321
SchI	GAGTC	1 cut(s)	206
SetI	ASST	2 cut(s)	78, 150
SfaNI	GCATC	2 cut(s)	60, 207
Sse9I	AATT	2 cut(s)	286, 334
SsiI	CCGC	3 cut(s)	19, 26, 65
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	96, 215
TasI	AATT	2 cut(s)	286, 334
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	203
XmnI	GAANNNNTTC	2 cut(s)	243, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.