Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013776

Physical Location & Seq

Genomic Coordinates Reverse (-)

9034534 .. 9035238

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0067800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTTGCAATGGTGGATCAGGCCTTTGCTGCAGATGCAAAAGGGCTCAACGCTGGCGGAGGGCAACGTAGTCGATCTGGGTTCCTTAACTTGCAGTCGACCATAACGTTGTCTGGCGTTTGGTGGTGGGCTGAAACGATAATGATGGAGCTACGAGGTTTGGTTCGCTATTGGGAACGGATTCGGGCAGAGGTGGTCACCGGAACCAACCTTGCAAGTTTCGGACCTTTTGTGGCGGTTCCTAGAAAGCCAGAGTCGATTCTGACGGACAAAAAAATGGTTTGCAGCAGTCTTTTACTTTTCTTTATTAGGTTTTTAGGTTTTGTTTTTTGGTTAGGTCTAATAAGTCCATCCTCAAATGAGCGAGGGTTTGGTTGTCTTGGATTTGTAGTTGTGCCATTGTTATGGTGTCTCTCCCGAGGACGATTTGTTTCAACTCTAGTTTACTTTTGTTGTCGATTTGCCGACAATCGATCCTTTACACGTGGTCTGGTAATTTTTGGACGCGGTGTGGAAGAGGACGACGTCTTCTTTGCGGTTGACTACGAGGTATTACTAGGACTTTCGGGATTACATGCTCAATGTAGCCTTGGAAAGGGGTGTTTTGTGGTTAGAGTTTGGGTCCTTTGGCCTGATGGTTTCTGTAACCGCGGTTTTCTTCGGGTATTGGCTTATGTCCCCTCCGACCCCCCTCCCAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

234

Amino Acids

26.09

Weight (kDa)

8.87

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013776)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029349
rosa_multiflora	Rmu_sc0002196.1_g000001 Rmu_sc0003819.1_g000015 Rmu_sc0004006.1_g000001 Rmu_sc0030815.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315470
rosa_rugosa	Rorug01G0126800 Rorug06G0062600 Rorug06G0067700 Rorug06G0067800
rosa_samantha	Rh1AG148000 Rh1BG115800 Rh1BG115900 Rh1CG139400 Rh1DG154400 Rh6AG187300 Rh6BG190600
rosa_wichuraiana	Rw1G011950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	2 cut(s)	507, 651
AciI	CCGC	6 cut(s)	57, 236, 507, 536, 649, 651
AclI	AACGTT	1 cut(s)	107
AclWI	GGATC	2 cut(s)	24, 468
AcvI	CACGTG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	595
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	1 cut(s)	435
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	24, 468
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	2 cut(s)	21, 629
ApeKI	GCWGC	2 cut(s)	29, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	224, 622
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	224, 622
BanII	GRGCYC	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	16, 297
BccI	CCATC	3 cut(s)	139, 358, 629
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	243, 440, 557
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	30, 286
BlsI	GCNGC	2 cut(s)	31, 287
Bme18I	GGWCC	2 cut(s)	224, 622
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	224, 622
BmiI	GGNNCC	4 cut(s)	83, 205, 240, 623
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	418, 589, 649
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	15
BseCI	ATCGAT	1 cut(s)	472
BseDI	CCNNGG	3 cut(s)	418, 589, 649
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	16, 297
Bsh1236I	CGCG	2 cut(s)	507, 651
BshFI	GGCC	2 cut(s)	23, 631
BshVI	ATCGAT	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	23, 631
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	16, 74, 473
BspACI	CCGC	6 cut(s)	57, 236, 507, 536, 649, 651
BspANI	GGCC	2 cut(s)	23, 631
BspDI	ATCGAT	1 cut(s)	472
BspFNI	CGCG	2 cut(s)	507, 651
BspLI	GGNNCC	4 cut(s)	83, 205, 240, 623
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	24, 468
BsrDI	GCAATG	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	418, 589, 649
BssMI	GATC	3 cut(s)	16, 74, 473
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	649
BstEII	GGTNACC	1 cut(s)	196
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	2 cut(s)	507, 651
BstKTI	GATC	3 cut(s)	19, 77, 476
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	16, 74, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 35
BstNSI	RCATGY	1 cut(s)	578
BstPI	GGTNACC	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	2 cut(s)	507, 651
BstV1I	GCAGC	2 cut(s)	16, 297
BstV2I	GAAGAC	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	23, 631
BsuTUI	ATCGAT	1 cut(s)	472
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	224, 622
Cfr42I	CCGCGG	1 cut(s)	652
ClaI	ATCGAT	1 cut(s)	472
CseI	GACGC	1 cut(s)	513
CviAII	CATG	1 cut(s)	575
CviJI	RGCY	8 cut(s)	23, 46, 131, 151, 250, 588, 631, 671
CviKI_1	RGCY	8 cut(s)	23, 46, 131, 151, 250, 588, 631, 671
DpnI	GATC	3 cut(s)	18, 76, 475
DpnII	GATC	3 cut(s)	16, 74, 473
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	224, 622
Eco72I	CACGTG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	417
Eco91I	GGTNACC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	622
EcoO65I	GGTNACC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	1 cut(s)	578
FaiI	YATR	5 cut(s)	104, 406, 576, 675, 703
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	30, 286
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	30, 286
FspBI	CTAG	3 cut(s)	243, 440, 557
GluI	GCNGC	2 cut(s)	30, 286
HaeIII	GGCC	2 cut(s)	23, 631
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	1 cut(s)	578
HincII	GTYRAC	2 cut(s)	99, 541
HindII	GTYRAC	2 cut(s)	99, 541
HinfI	GANTC	3 cut(s)	181, 254, 259
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	99, 445, 541
Hpy188I	TCNGA	3 cut(s)	224, 264, 685
Hpy188III	TCNNGA	2 cut(s)	417, 567
Hpy8I	GTNNAC	3 cut(s)	99, 445, 541
Hpy99I	CGWCG	1 cut(s)	527
HpyCH4IV	ACGT	4 cut(s)	67, 107, 484, 525
HpyCH4V	TGCA	6 cut(s)	8, 32, 38, 94, 215, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 35
HpySE526I	ACGT	4 cut(s)	67, 107, 484, 525
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	1 cut(s)	578
KspI	CCGCGG	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	16, 74, 473
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	8 cut(s)	5, 39, 63, 99, 214, 264, 476, 645
Lsp1109I	GCAGC	2 cut(s)	16, 297
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	243, 440, 557
MaeII	ACGT	4 cut(s)	67, 107, 484, 525
MaeIII	GTNAC	2 cut(s)	196, 644
MalI	GATC	3 cut(s)	18, 76, 475
MboI	GATC	3 cut(s)	16, 74, 473
MboII	GAAGA	3 cut(s)	520, 527, 650
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	651
MspI	CCGG	1 cut(s)	201
MvnI	CGCG	2 cut(s)	507, 651
MwoI	GCNNNNNNNGC	2 cut(s)	29, 35
NdeII	GATC	3 cut(s)	16, 74, 473
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	4 cut(s)	83, 205, 240, 623
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	578
PceI	AGGCCT	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	181, 259
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	31, 287
PleI	GAGTC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	485
PmlI	CACGTG	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	622
Psp1406I	AACGTT	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	622
PspCI	CACGTG	1 cut(s)	485
PspEI	GGTNACC	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	83, 205, 240, 623
PspPI	GGNCC	2 cut(s)	224, 622
PspPPI	RGGWCCY	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	403
SacII	CCGCGG	1 cut(s)	652
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	30, 286
Sau3AI	GATC	3 cut(s)	16, 74, 473
Sau96I	GGNCC	2 cut(s)	224, 622
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	652
SgrBI	CCGCGG	1 cut(s)	652
SinI	GGWCC	2 cut(s)	224, 622
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	1 cut(s)	495
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	6 cut(s)	57, 236, 507, 536, 649, 651
SspMI	CTAG	3 cut(s)	243, 440, 557
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	589
TaiI	ACGT	4 cut(s)	70, 110, 487, 528
TaqI	TCGA	5 cut(s)	73, 98, 257, 457, 472
TasI	AATT	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	181, 259
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	29, 285
Tsp45I	GTSAC	1 cut(s)	196
TspGWI	ACGGA	2 cut(s)	193, 281
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	2 cut(s)	224, 622
XagI	CCTNNNNNAGG	1 cut(s)	593
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	243, 440, 557
ZraI	GACGTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.