Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002283.1

Orthogroup ID

OG0019511

Physical Location & Seq

Genomic Coordinates Reverse (-)

236741 .. 238449

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002283.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgtctattgggggcaataaactttccggtgaggttttcagaaaagtccgatgggcagcggccggtgatcagaatcctgtgaaagttggccggaatccagccgccggtgaccggattccggtcaccccgatgaggttttcaaaaaagtccgatgggcagcggccggtgaccggaatccaccttcttatattctatttgggtgcggtggtgaagaacaaggagtgcaaggaggaacagcacggcagtgttcaaggtcgccgagagaggaattaccctcgggaaatagggcctagagaagaagagaacgtgggatcgatccaccaccagcaccaccaccatgacagcgatttggactcgaacagtttgtccagctttaccagtagtgtattgggcggccaatattcagatactttcactggctccagcagtagcagtagcaccaacgttgactgttgctccgataatattaccgaggaggatgaggatgaggatgatgcctgcctcgataattgggagactatggtggattccttagatctggttgctgggtttgtaaatcaaagcaagggtaaagttggaaagtataggataatattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_4

Protein Analysis

199

Amino Acids

21.94

Weight (kDa)

5.6

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019511)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002283.1_g000061 Rmu_sc0008839.1_g000012
rosa_roxburghii	Rroxscaffold_1G00049510 Rroxscaffold_4G00305510
rosa_rugosa	Rorug01G0108600 Rorug01G0108600
rosa_samantha	Rh1DG343400 Rh5DG103600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	59, 102, 160, 203, 393
AclI	AACGTT	1 cut(s)	444
AclWI	GGATC	2 cut(s)	310, 319
AcoI	YGGCCR	4 cut(s)	60, 88, 161, 394
AfiI	CCNNNNNNNGG	5 cut(s)	104, 111, 118, 132, 170
AgsI	TTSAA	2 cut(s)	141, 251
AleI	CACNNNNGTG	1 cut(s)	243
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	310, 319
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	5 cut(s)	60, 88, 161, 287, 394
ApeKI	GCWGC	2 cut(s)	56, 157
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	6 cut(s)	41, 77, 115, 119, 178, 220
AvaI	CYCGRG	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	68, 169
BccI	CCATC	2 cut(s)	45, 146
BceAI	ACGGC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	6 cut(s)	57, 60, 102, 158, 161, 394
BlsI	GCNGC	6 cut(s)	58, 61, 103, 159, 162, 395
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	275, 471
BsaWI	WCCGGW	4 cut(s)	26, 111, 118, 170
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	5 cut(s)	104, 111, 118, 132, 170
Bse118I	RCCGGY	3 cut(s)	62, 104, 163
Bse1I	ACTGG	2 cut(s)	378, 421
Bse8I	GATNNNNATC	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	275, 471
BseGI	GGATG	3 cut(s)	484, 490, 496
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	5 cut(s)	104, 111, 118, 132, 170
BseNI	ACTGG	2 cut(s)	378, 421
BseRI	GAGGAG	1 cut(s)	488
BseX3I	CGGCCG	2 cut(s)	60, 161
BseXI	GCAGC	2 cut(s)	68, 169
BseYI	CCCAGC	1 cut(s)	545
Bsh1285I	CGRYCG	2 cut(s)	63, 164
BshFI	GGCC	5 cut(s)	62, 90, 163, 289, 396
BshVI	ATCGAT	1 cut(s)	314
BsiEI	CGRYCG	2 cut(s)	63, 164
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	8 cut(s)	27, 63, 91, 105, 112, 119, 164, 171
BslI	CCNNNNNNNGG	5 cut(s)	104, 111, 118, 132, 170
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	5 cut(s)	62, 90, 163, 289, 396
BsoBI	CYCGRG	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	67, 311, 315, 535
BspACI	CCGC	5 cut(s)	59, 102, 160, 203, 393
BspANI	GGCC	5 cut(s)	62, 90, 163, 289, 396
BspDI	ATCGAT	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	2 cut(s)	310, 319
BsrFI	RCCGGY	3 cut(s)	62, 104, 163
BsrI	ACTGG	2 cut(s)	378, 421
BssAI	RCCGGY	3 cut(s)	62, 104, 163
BssECI	CCNNGG	2 cut(s)	275, 471
BssMI	GATC	4 cut(s)	67, 311, 315, 535
Bst4CI	ACNGT	2 cut(s)	362, 452
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	532
BstEII	GGTNACC	3 cut(s)	107, 121, 166
BstF5I	GGATG	3 cut(s)	484, 490, 496
BstKTI	GATC	4 cut(s)	70, 314, 318, 538
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	4 cut(s)	67, 311, 315, 535
BstMCI	CGRYCG	2 cut(s)	63, 164
BstPI	GGTNACC	3 cut(s)	107, 121, 166
BstV1I	GCAGC	2 cut(s)	68, 169
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BstZI	CGGCCG	2 cut(s)	60, 161
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	5 cut(s)	62, 90, 163, 289, 396
BsuTUI	ATCGAT	1 cut(s)	314
BtsCI	GGATG	3 cut(s)	484, 490, 496
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	250, 414
Cac8I	GCNNGC	1 cut(s)	499
Cfr10I	RCCGGY	3 cut(s)	62, 104, 163
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	314
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	8 cut(s)	62, 90, 101, 163, 289, 372, 396, 420
CviKI_1	RGCY	8 cut(s)	62, 90, 101, 163, 289, 372, 396, 420
DdeI	CTNAG	1 cut(s)	532
DpnI	GATC	4 cut(s)	69, 313, 317, 537
DpnII	GATC	4 cut(s)	67, 311, 315, 535
EaeI	YGGCCR	4 cut(s)	60, 88, 161, 394
EagI	CGGCCG	2 cut(s)	60, 161
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EclXI	CGGCCG	2 cut(s)	60, 161
Eco52I	CGGCCG	2 cut(s)	60, 161
Eco88I	CYCGRG	1 cut(s)	276
Eco91I	GGTNACC	3 cut(s)	107, 121, 166
EcoO109I	RGGNCCY	1 cut(s)	287
EcoO65I	GGTNACC	3 cut(s)	107, 121, 166
FaeI	CATG	1 cut(s)	341
FaiI	YATR	4 cut(s)	188, 339, 521, 585
FatI	CATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	6 cut(s)	57, 60, 102, 158, 161, 394
FokI	GGATG	3 cut(s)	491, 497, 503
Fsp4HI	GCNGC	6 cut(s)	57, 60, 102, 158, 161, 394
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	6 cut(s)	57, 60, 102, 158, 161, 394
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	5 cut(s)	62, 90, 163, 289, 396
HapII	CCGG	8 cut(s)	27, 63, 91, 105, 112, 119, 164, 171
Hin1II	CATG	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	6 cut(s)	73, 94, 115, 174, 353, 527
HpaII	CCGG	8 cut(s)	27, 63, 91, 105, 112, 119, 164, 171
HphI	GGTGA	6 cut(s)	41, 77, 115, 119, 178, 220
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	6 cut(s)	41, 50, 72, 151, 406, 460
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	362, 452
HpyCH4IV	ACGT	2 cut(s)	306, 444
HpyCH4V	TGCA	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	532
HpySE526I	ACGT	2 cut(s)	306, 444
Hsp92II	CATG	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	67, 311, 315, 535
LmnI	GCTCC	2 cut(s)	425, 461
Lsp1109I	GCAGC	2 cut(s)	68, 169
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	306, 444
MaeIII	GTNAC	3 cut(s)	107, 121, 166
MalI	GATC	4 cut(s)	69, 313, 317, 537
MboI	GATC	4 cut(s)	67, 311, 315, 535
MboII	GAAGA	3 cut(s)	223, 308, 311
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	2 cut(s)	268, 508
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	556
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	3 cut(s)	128, 243, 336
MspA1I	CMGCKG	2 cut(s)	59, 160
MspI	CCGG	8 cut(s)	27, 63, 91, 105, 112, 119, 164, 171
NdeII	GATC	4 cut(s)	67, 311, 315, 535
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	3 cut(s)	107, 121, 166
OliI	CACNNNNGTG	1 cut(s)	243
PfeI	GAWTC	5 cut(s)	73, 94, 115, 174, 527
PkrI	GCNGC	6 cut(s)	58, 61, 103, 159, 162, 395
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp1406I	AACGTT	1 cut(s)	444
PspEI	GGTNACC	3 cut(s)	107, 121, 166
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	535
RseI	CAYNNNNRTG	3 cut(s)	128, 243, 336
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	6 cut(s)	57, 60, 102, 158, 161, 394
Sau3AI	GATC	4 cut(s)	67, 311, 315, 535
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	347
SetI	ASST	7 cut(s)	36, 137, 183, 256, 309, 374, 447
SfaNI	GCATC	1 cut(s)	484
SgrAI	CRCCGGYG	1 cut(s)	104
SmiMI	CAYNNNNRTG	3 cut(s)	128, 243, 336
Sse9I	AATT	2 cut(s)	268, 508
SsiI	CCGC	5 cut(s)	59, 102, 160, 203, 393
SspI	AATATT	3 cut(s)	401, 466, 594
SspMI	CTAG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	362, 452
TaiI	ACGT	2 cut(s)	309, 447
TaqI	TCGA	3 cut(s)	314, 356, 504
TasI	AATT	2 cut(s)	268, 508
TauI	GCSGC	4 cut(s)	62, 104, 163, 396
TfiI	GAWTC	5 cut(s)	73, 94, 115, 174, 527
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TscAI	CASTG	2 cut(s)	250, 421
TseFI	GTSAC	3 cut(s)	107, 121, 166
TseI	GCWGC	2 cut(s)	56, 157
Tsp45I	GTSAC	3 cut(s)	107, 121, 166
TspRI	CASTG	2 cut(s)	250, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.