Rroxscaffold_1G00049510

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019511
Physical Location & Seq
Forward (+)
69740976 .. 69743030
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049510.1

Sequence Viewer

Length: 633 bp
ATGAAGATCAAAGTTAGAAGCCTATCAAGAATTTGGTTACGGCTCACTGGCTGTCTGCGCCACAAACAAGATGGTGATGACGATGATGATGATTTGTGCTCCAAGCAACTGCCTGATGATATCATGCAATTGGTATTAAAACGTCTCTGCCCCTCTCAGACTACCTCCACTGTCGTGACGTATGCCCTTCTTGGCGAGCAGCAATTGACAGCAAGCGTTGCCTTCCTGCTCCACGTAAATCAACTTATATATATGCCTTTTGATGGATTCCGGACATGTCTTCTCCATCAAAGATGGTTGCTTTGTGCGGTGGTGAAGAACAAGGAGTGCAAGGAGGAACATCATGGCGGTCTTCAAGGTCGCCGAGAGCGCAATAGCCCTCGGGAAATAGGGCCTAGAGAAGAAGAGAACGTGGGATCGATCCACCACCAGCACCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTTACCAGTAGTGTGTTGGGCAGCCACGATTTAGAGACTTTCACCGGCTCCAGCAGCAGCAGTAGTACCAGCATTGACTGTTGCTCCGGTAATATTACCGAGGAGGATGAGGATGAGGATGATGGCTGCACATGTATACTTACTTCATCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

210

Amino Acids

23.5

Weight (kDa)

5.27

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019511)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002283.1_g000061 Rmu_sc0008839.1_g000012
rosa_roxburghii Rroxscaffold_1G00049510 Rroxscaffold_4G00305510
rosa_rugosa Rorug01G0108600 Rorug01G0108600
rosa_samantha Rh1DG343400 Rh5DG103600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 613
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 2 cut(s) 308, 348
AclWI GGATC 2 cut(s) 415, 424
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 2 cut(s) 275, 608
AgsI TTSAA 1 cut(s) 356
AleI CACNNNNGTG 1 cut(s) 173
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 1 cut(s) 477
AluI AGCT 1 cut(s) 477
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 149, 506
AlwI GGATC 2 cut(s) 415, 424
Ama87I CYCGRG 1 cut(s) 381
Aor13HI TCCGGA 1 cut(s) 270
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 5 cut(s) 199, 498, 531, 534, 603
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspLEI GCGC 2 cut(s) 60, 372
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 3 cut(s) 86, 325, 511
AvaI CYCGRG 1 cut(s) 381
BarI GAAGNNNNNNTAC 1 cut(s) 604
BbsI GAAGAC 2 cut(s) 272, 344
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 5 cut(s) 211, 510, 543, 546, 590
BccI CCATC 5 cut(s) 65, 257, 288, 294, 593
BceAI ACGGC 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 149, 506
BfaI CTAG 1 cut(s) 396
BisI GCNGC 5 cut(s) 200, 499, 532, 535, 604
BlsI GCNGC 5 cut(s) 201, 500, 533, 536, 605
BmeT110I CYCGRG 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 526
BpiI GAAGAC 2 cut(s) 272, 344
BpmI CTGGAG 1 cut(s) 511
Bsa29I ATCGAT 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 380, 576
BsaWI WCCGGW 2 cut(s) 270, 563
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 52, 483
BseAI TCCGGA 1 cut(s) 270
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 380, 576
BseGI GGATG 3 cut(s) 589, 595, 601
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 52, 483
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 5 cut(s) 211, 510, 543, 546, 590
BsgI GTGCAG 1 cut(s) 589
BshFI GGCC 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 3 cut(s) 271, 522, 564
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 149, 506
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 270
Bsp143I GATC 3 cut(s) 6, 416, 420
BspACI CCGC 2 cut(s) 308, 348
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 419
BspEI TCCGGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 2 cut(s) 415, 424
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 2 cut(s) 52, 483
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 2 cut(s) 380, 576
BssMI GATC 3 cut(s) 6, 416, 420
BssNAI GTATAC 1 cut(s) 614
Bst1107I GTATAC 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 172, 467, 557
Bst6I CTCTTC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 197, 214
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 589, 595, 601
BstHHI GCGC 2 cut(s) 60, 372
BstKTI GATC 3 cut(s) 9, 419, 423
BstMAI GTCTC 2 cut(s) 149, 506
BstMBI GATC 3 cut(s) 6, 416, 420
BstMWI GCNNNNNNNGC 4 cut(s) 57, 218, 369, 531
BstNSI RCATGY 2 cut(s) 279, 612
BstV1I GCAGC 5 cut(s) 211, 510, 543, 546, 590
BstV2I GAAGAC 2 cut(s) 272, 344
BstZ17I GTATAC 1 cut(s) 614
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 1 cut(s) 394
BsuTUI ATCGAT 1 cut(s) 419
BtsCI GGATG 3 cut(s) 589, 595, 601
BtsIMutI CAGTG 2 cut(s) 45, 168
Cac8I GCNNGC 2 cut(s) 197, 214
CfoI GCGC 2 cut(s) 60, 372
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 419
Csp6I GTAC 1 cut(s) 543
CviAII CATG 5 cut(s) 124, 276, 344, 443, 609
CviJI RGCY 9 cut(s) 21, 43, 51, 378, 394, 477, 501, 525, 603
CviKI_1 RGCY 9 cut(s) 21, 43, 51, 378, 394, 477, 501, 525, 603
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 1 cut(s) 156
DpnI GATC 3 cut(s) 8, 418, 422
DpnII GATC 3 cut(s) 6, 416, 420
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 392
EcoRV GATATC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 5 cut(s) 127, 279, 347, 446, 612
FatI CATG 5 cut(s) 123, 275, 343, 442, 608
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 5 cut(s) 200, 499, 532, 535, 604
FokI GGATG 3 cut(s) 596, 602, 608
Fsp4HI GCNGC 5 cut(s) 200, 499, 532, 535, 604
FspBI CTAG 1 cut(s) 396
GlaI GCGC 2 cut(s) 59, 371
GluI GCNGC 5 cut(s) 200, 499, 532, 535, 604
GsuI CTGGAG 1 cut(s) 511
HaeIII GGCC 1 cut(s) 394
HapII CCGG 3 cut(s) 271, 522, 564
HhaI GCGC 2 cut(s) 60, 372
Hin1II CATG 5 cut(s) 127, 279, 347, 446, 612
Hin6I GCGC 2 cut(s) 58, 370
HinP1I GCGC 2 cut(s) 58, 370
HinfI GANTC 2 cut(s) 267, 458
HpaII CCGG 3 cut(s) 271, 522, 564
HphI GGTGA 3 cut(s) 86, 325, 511
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 4 cut(s) 27, 175, 271, 383
Hpy8I GTNNAC 1 cut(s) 614
HpyAV CCTTC 2 cut(s) 197, 232
HpyCH4III ACNGT 3 cut(s) 172, 467, 557
HpyCH4IV ACGT 4 cut(s) 142, 179, 234, 411
HpyCH4V TGCA 3 cut(s) 127, 330, 606
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 218, 369, 531
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 4 cut(s) 142, 179, 234, 411
Hsp92II CATG 5 cut(s) 127, 279, 347, 446, 612
HspAI GCGC 2 cut(s) 58, 370
Kpn2I TCCGGA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 6, 416, 420
LmnI GCTCC 4 cut(s) 104, 234, 530, 566
Lsp1109I GCAGC 5 cut(s) 211, 510, 543, 546, 590
MaeI CTAG 1 cut(s) 396
MaeII ACGT 4 cut(s) 142, 179, 234, 411
MaeIII GTNAC 2 cut(s) 36, 175
MalI GATC 3 cut(s) 8, 418, 422
MboI GATC 3 cut(s) 6, 416, 420
MboII GAAGA 6 cut(s) 16, 272, 328, 344, 413, 416
MfeI CAATTG 2 cut(s) 128, 203
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 3 cut(s) 30, 128, 203
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 8 cut(s) 163, 175, 328, 390, 571, 574, 580, 586
MroI TCCGGA 1 cut(s) 270
MseI TTAA 2 cut(s) 137, 631
MslI CAYNNNNRTG 2 cut(s) 173, 441
MspI CCGG 3 cut(s) 271, 522, 564
MunI CAATTG 2 cut(s) 128, 203
MwoI GCNNNNNNNGC 4 cut(s) 57, 218, 369, 531
NdeII GATC 3 cut(s) 6, 416, 420
NlaIII CATG 5 cut(s) 127, 279, 347, 446, 612
NlaIV GGNNCC 1 cut(s) 526
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 2 cut(s) 279, 612
OliI CACNNNNGTG 1 cut(s) 173
PciI ACATGT 2 cut(s) 275, 608
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 5 cut(s) 201, 500, 533, 536, 605
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 235
PscI ACATGT 2 cut(s) 275, 608
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 392
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
RseI CAYNNNNRTG 2 cut(s) 173, 441
SaqAI TTAA 2 cut(s) 137, 631
SatI GCNGC 5 cut(s) 200, 499, 532, 535, 604
Sau3AI GATC 3 cut(s) 6, 416, 420
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 452
SduI GDGCHC 1 cut(s) 101
SetI ASST 7 cut(s) 145, 167, 182, 237, 361, 414, 479
SmiMI CAYNNNNRTG 2 cut(s) 173, 441
Sse9I AATT 3 cut(s) 30, 128, 203
SsiI CCGC 2 cut(s) 308, 348
SspI AATATT 1 cut(s) 571
SspMI CTAG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 172, 467, 557
TaiI ACGT 4 cut(s) 145, 182, 237, 414
TaqI TCGA 2 cut(s) 419, 461
TasI AATT 3 cut(s) 30, 128, 203
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 137, 631
Tru9I TTAA 2 cut(s) 137, 631
TscAI CASTG 2 cut(s) 52, 175
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 5 cut(s) 199, 498, 531, 534, 603
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 17, 612
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 2 cut(s) 52, 175
XapI RAATTY 1 cut(s) 30
XceI RCATGY 2 cut(s) 279, 612
XcmI CCANNNNNNNNNTGG 2 cut(s) 68, 490
XmiI GTMKAC 1 cut(s) 613
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.