RING/Ubox like zinc-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0002283.1_g000061 Rmu_sc0008839.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00049510 Rroxscaffold_4G00305510 |
| rosa_rugosa | Rorug01G0108600 Rorug01G0108600 |
| rosa_samantha | Rh1DG343400 Rh5DG103600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 103 |
| AciI | CCGC | 2 cut(s) | 103, 231 |
| AclWI | GGATC | 2 cut(s) | 148, 157 |
| AcoI | YGGCCR | 1 cut(s) | 232 |
| AgsI | TTSAA | 1 cut(s) | 89 |
| AleI | CACNNNNGTG | 1 cut(s) | 81 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 188, 220 |
| AluBI | AGCT | 1 cut(s) | 210 |
| AluI | AGCT | 1 cut(s) | 210 |
| AlwI | GGATC | 2 cut(s) | 148, 157 |
| Ama87I | CYCGRG | 1 cut(s) | 114 |
| AoxI | GGCC | 2 cut(s) | 125, 232 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 188, 220 |
| AspS9I | GGNCC | 1 cut(s) | 125 |
| AvaI | CYCGRG | 1 cut(s) | 114 |
| BfaI | CTAG | 1 cut(s) | 129 |
| BisI | GCNGC | 1 cut(s) | 232 |
| BlsI | GCNGC | 1 cut(s) | 233 |
| BmeT110I | CYCGRG | 1 cut(s) | 114 |
| BmgT120I | GGNCC | 1 cut(s) | 125 |
| Bsa29I | ATCGAT | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 1 cut(s) | 113 |
| Bse1I | ACTGG | 1 cut(s) | 216 |
| BseCI | ATCGAT | 1 cut(s) | 152 |
| BseDI | CCNNGG | 1 cut(s) | 113 |
| BseNI | ACTGG | 1 cut(s) | 216 |
| BshFI | GGCC | 2 cut(s) | 127, 234 |
| BshVI | ATCGAT | 1 cut(s) | 152 |
| BsiHKCI | CYCGRG | 1 cut(s) | 114 |
| BsmI | GAATGC | 1 cut(s) | 36 |
| BsnI | GGCC | 2 cut(s) | 127, 234 |
| BsoBI | CYCGRG | 1 cut(s) | 114 |
| Bsp143I | GATC | 2 cut(s) | 149, 153 |
| BspACI | CCGC | 2 cut(s) | 103, 231 |
| BspANI | GGCC | 2 cut(s) | 127, 234 |
| BspDI | ATCGAT | 1 cut(s) | 152 |
| BspPI | GGATC | 2 cut(s) | 148, 157 |
| BsrBI | CCGCTC | 1 cut(s) | 103 |
| BsrI | ACTGG | 1 cut(s) | 216 |
| BssECI | CCNNGG | 1 cut(s) | 113 |
| BssMI | GATC | 2 cut(s) | 149, 153 |
| Bst4CI | ACNGT | 2 cut(s) | 83, 200 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstKTI | GATC | 2 cut(s) | 152, 156 |
| BstMBI | GATC | 2 cut(s) | 149, 153 |
| Bsu15I | ATCGAT | 1 cut(s) | 152 |
| BsuRI | GGCC | 2 cut(s) | 127, 234 |
| BsuTUI | ATCGAT | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 1 cut(s) | 125 |
| ClaI | ATCGAT | 1 cut(s) | 152 |
| CviAII | CATG | 1 cut(s) | 176 |
| CviJI | RGCY | 4 cut(s) | 111, 127, 210, 234 |
| CviKI_1 | RGCY | 4 cut(s) | 111, 127, 210, 234 |
| DpnI | GATC | 2 cut(s) | 151, 155 |
| DpnII | GATC | 2 cut(s) | 149, 153 |
| DraI | TTTAAA | 1 cut(s) | 43 |
| EaeI | YGGCCR | 1 cut(s) | 232 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco88I | CYCGRG | 1 cut(s) | 114 |
| EcoO109I | RGGNCCY | 1 cut(s) | 125 |
| FaeI | CATG | 1 cut(s) | 179 |
| FaiI | YATR | 2 cut(s) | 177, 244 |
| FatI | CATG | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 1 cut(s) | 232 |
| Fsp4HI | GCNGC | 1 cut(s) | 232 |
| FspBI | CTAG | 1 cut(s) | 129 |
| GluI | GCNGC | 1 cut(s) | 232 |
| HaeIII | GGCC | 2 cut(s) | 127, 234 |
| Hin1II | CATG | 1 cut(s) | 179 |
| HinfI | GANTC | 2 cut(s) | 191, 239 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 1 cut(s) | 116 |
| Hpy99I | CGWCG | 1 cut(s) | 83 |
| HpyCH4III | ACNGT | 2 cut(s) | 83, 200 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyCH4V | TGCA | 2 cut(s) | 34, 63 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 1 cut(s) | 179 |
| Kzo9I | GATC | 2 cut(s) | 149, 153 |
| LpnPI | CCDG | 3 cut(s) | 176, 220, 229 |
| MaeI | CTAG | 1 cut(s) | 129 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MalI | GATC | 2 cut(s) | 151, 155 |
| MbiI | CCGCTC | 1 cut(s) | 103 |
| MboI | GATC | 2 cut(s) | 149, 153 |
| MboII | GAAGA | 2 cut(s) | 146, 149 |
| MluCI | AATT | 1 cut(s) | 9 |
| MlyI | GAGTC | 1 cut(s) | 185 |
| MmeI | TCCRAC | 1 cut(s) | 5 |
| MnlI | CCTC | 2 cut(s) | 61, 123 |
| MseI | TTAA | 2 cut(s) | 14, 42 |
| MslI | CAYNNNNRTG | 2 cut(s) | 81, 174 |
| Mva1269I | GAATGC | 1 cut(s) | 36 |
| NdeII | GATC | 2 cut(s) | 149, 153 |
| NlaIII | CATG | 1 cut(s) | 179 |
| NmeAIII | GCCGAG | 1 cut(s) | 122 |
| OliI | CACNNNNGTG | 1 cut(s) | 81 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 200 |
| PctI | GAATGC | 1 cut(s) | 36 |
| PfeI | GAWTC | 1 cut(s) | 239 |
| PkrI | GCNGC | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 185 |
| PpsI | GAGTC | 1 cut(s) | 185 |
| PspPI | GGNCC | 1 cut(s) | 125 |
| RseI | CAYNNNNRTG | 2 cut(s) | 81, 174 |
| SaqAI | TTAA | 2 cut(s) | 14, 42 |
| SatI | GCNGC | 1 cut(s) | 232 |
| Sau3AI | GATC | 2 cut(s) | 149, 153 |
| Sau96I | GGNCC | 1 cut(s) | 125 |
| SchI | GAGTC | 1 cut(s) | 185 |
| SetI | ASST | 3 cut(s) | 94, 147, 212 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 81, 174 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SsiI | CCGC | 2 cut(s) | 103, 231 |
| SspMI | CTAG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 83, 200 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TaqI | TCGA | 2 cut(s) | 152, 194 |
| TasI | AATT | 1 cut(s) | 9 |
| TauI | GCSGC | 1 cut(s) | 234 |
| TfiI | GAWTC | 1 cut(s) | 239 |
| Tru1I | TTAA | 2 cut(s) | 14, 42 |
| Tru9I | TTAA | 2 cut(s) | 14, 42 |
| TspDTI | ATGAA | 2 cut(s) | 17, 231 |
| TspGWI | ACGGA | 1 cut(s) | 192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XspI | CTAG | 1 cut(s) | 129 |