Rmu_sc0008839.1_g000012

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008839.1
OG0019511
Physical Location & Seq
Forward (+)
32719 .. 33222
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008839.1_g000012.1.cds

Sequence Viewer

Length: 375 bp
atgtcatcttctggtgcggtggtgaagaacaaggagtgcaaggaggaacagcacggcagtgttcaaggtcgccgagagaggaattaccctcgggaaatagggcctagagaagaagagaacgtgggatcgatccaccaccagcaccaccaccatgacagcgatttggactcgaacagtctgtccagctttaccagtagtgtattgggcagccacgattcagagactttcaccggctccagcagtagcagtagcaccagcgttgactgttgctccgataatattaccaaggaggatgaggatgaggatgatggctgcctcgataattgggagactatggcggattccttagatctggttgctgggtttgtaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_4

Protein Analysis

124

Amino Acids

13.57

Weight (kDa)

4.53

Isoelectric Point (pI)

63.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019511)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002283.1_g000061 Rmu_sc0008839.1_g000012
rosa_roxburghii Rroxscaffold_1G00049510 Rroxscaffold_4G00305510
rosa_rugosa Rorug01G0108600 Rorug01G0108600
rosa_samantha Rh1DG343400 Rh5DG103600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 338
AclWI GGATC 2 cut(s) 124, 133
AgsI TTSAA 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 57
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 215, 323
AlwI GGATC 2 cut(s) 124, 133
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 207, 312
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 34, 220
AvaI CYCGRG 1 cut(s) 90
BbvI GCAGC 2 cut(s) 219, 299
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 215, 323
BfaI CTAG 1 cut(s) 105
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 208, 313
BlsI GCNGC 2 cut(s) 209, 314
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 220
Bsa29I ATCGAT 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 89, 285
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 89, 285
BseGI GGATG 3 cut(s) 298, 304, 310
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 219, 299
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 215, 323
BsnI GGCC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 3 cut(s) 125, 129, 349
BspACI CCGC 2 cut(s) 17, 338
BspANI GGCC 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 2 cut(s) 124, 133
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 89, 285
BssMI GATC 3 cut(s) 125, 129, 349
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 176, 266
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 346
BstF5I GGATG 3 cut(s) 298, 304, 310
BstKTI GATC 3 cut(s) 128, 132, 352
BstMAI GTCTC 2 cut(s) 215, 323
BstMBI GATC 3 cut(s) 125, 129, 349
BstV1I GCAGC 2 cut(s) 219, 299
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 128
BtsCI GGATG 3 cut(s) 298, 304, 310
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 128
CviAII CATG 1 cut(s) 152
CviJI RGCY 5 cut(s) 103, 186, 210, 234, 312
CviKI_1 RGCY 5 cut(s) 103, 186, 210, 234, 312
DdeI CTNAG 1 cut(s) 346
DpnI GATC 3 cut(s) 127, 131, 351
DpnII GATC 3 cut(s) 125, 129, 349
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 155
FaiI YATR 2 cut(s) 153, 335
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 208, 313
FokI GGATG 3 cut(s) 305, 311, 317
Fsp4HI GCNGC 2 cut(s) 208, 313
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 208, 313
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 167, 215, 341
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 34, 220
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 220, 274
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 176, 266
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 346
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 125, 129, 349
LmnI GCTCC 2 cut(s) 239, 275
LpnPI CCDG 8 cut(s) 152, 196, 205, 244, 250, 268, 338, 345
Lsp1109I GCAGC 2 cut(s) 219, 299
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 120
MalI GATC 3 cut(s) 127, 131, 351
MboI GATC 3 cut(s) 125, 129, 349
MboII GAAGA 3 cut(s) 37, 122, 125
MflI RGATCY 1 cut(s) 349
MluCI AATT 3 cut(s) 82, 322, 370
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 7 cut(s) 37, 72, 99, 283, 289, 295, 326
MseI TTAA 1 cut(s) 373
MslI CAYNNNNRTG 2 cut(s) 57, 150
MspI CCGG 1 cut(s) 231
NdeII GATC 3 cut(s) 125, 129, 349
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 57
PfeI GAWTC 2 cut(s) 215, 341
PkrI GCNGC 2 cut(s) 209, 314
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 57, 150
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 2 cut(s) 208, 313
Sau3AI GATC 3 cut(s) 125, 129, 349
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 161
SetI ASST 3 cut(s) 70, 123, 188
SmiMI CAYNNNNRTG 2 cut(s) 57, 150
Sse9I AATT 3 cut(s) 82, 322, 370
SsiI CCGC 2 cut(s) 17, 338
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 176, 266
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 128, 170, 318
TasI AATT 3 cut(s) 82, 322, 370
TfiI GAWTC 2 cut(s) 215, 341
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 207, 312
TspRI CASTG 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.