Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019511

Physical Location & Seq

Genomic Coordinates Reverse (-)

9438264 .. 9438982

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCATCTTCTGGTGCGGGGGTGAAGAACAAGGAGTGCAAGGAGGAACAGCACGGCGGTGTTCAAGGTCGCCGAGAGCGGAATAGCCCTTGGGAAATAGGGCCTAGAGAAGAAGAGAACGTGGGATCGATCCACCACCAGCACCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTTACCAGTAGTATGTTGGGCGGCCACGATTCAGAGACTTTCACCGGCTCCAGCAGCAGCAGTAGCACCAGCGTTGACTGTTGCTCCGGTAATATTACCGAGGAGGATGAGGATGAGGATGATGGCTGCACAAGTATACTTACTTCATCAACTGAAATATCACTAGTATGTGGAATGGAATGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_4

Protein Analysis

124

Amino Acids

13.25

Weight (kDa)

4.52

Isoelectric Point (pI)

89.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019511)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002283.1_g000061 Rmu_sc0008839.1_g000012
rosa_roxburghii	Rroxscaffold_1G00049510 Rroxscaffold_4G00305510
rosa_rugosa	Rorug01G0108600 Rorug01G0108600
rosa_samantha	Rh1DG343400 Rh5DG103600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	4 cut(s)	17, 57, 79, 207
AclWI	GGATC	2 cut(s)	124, 133
AcoI	YGGCCR	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	65
AhlI	ACTAGT	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	57
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	124, 133
AoxI	GGCC	2 cut(s)	101, 208
ApeKI	GCWGC	3 cut(s)	240, 243, 312
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	34, 220
BarI	GAAGNNNNNNTAC	2 cut(s)	313, 345
BbvI	GCAGC	3 cut(s)	252, 255, 299
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	2 cut(s)	105, 350
BisI	GCNGC	4 cut(s)	208, 241, 244, 313
BlsI	GCNGC	4 cut(s)	209, 242, 245, 314
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	89, 285
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	89, 285
BseGI	GGATG	3 cut(s)	298, 304, 310
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	252, 255, 299
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	103, 210
BshVI	ATCGAT	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	231, 273
BsmAI	GTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	103, 210
Bsp143I	GATC	2 cut(s)	125, 129
BspACI	CCGC	4 cut(s)	17, 57, 79, 207
BspANI	GGCC	2 cut(s)	103, 210
BspDI	ATCGAT	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	124, 133
BsrBI	CCGCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	89, 285
BssMI	GATC	2 cut(s)	125, 129
BssNAI	GTATAC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	89
Bst1107I	GTATAC	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	176, 266
Bst6I	CTCTTC	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	298, 304, 310
BstKTI	GATC	2 cut(s)	128, 132
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	125, 129
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 249
BstV1I	GCAGC	3 cut(s)	252, 255, 299
BstZ17I	GTATAC	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	103, 210
BsuTUI	ATCGAT	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	298, 304, 310
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	128
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	6 cut(s)	87, 103, 186, 210, 234, 312
CviKI_1	RGCY	6 cut(s)	87, 103, 186, 210, 234, 312
DpnI	GATC	2 cut(s)	127, 131
DpnII	GATC	2 cut(s)	125, 129
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	153, 200, 323, 355
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	208, 241, 244, 313
FokI	GGATG	3 cut(s)	305, 311, 317
Fsp4HI	GCNGC	4 cut(s)	208, 241, 244, 313
FspBI	CTAG	2 cut(s)	105, 350
GluI	GCNGC	4 cut(s)	208, 241, 244, 313
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	103, 210
HapII	CCGG	2 cut(s)	231, 273
Hin1II	CATG	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	167, 215
HpaII	CCGG	2 cut(s)	231, 273
HphI	GGTGA	2 cut(s)	34, 220
Hpy166II	GTNNAC	2 cut(s)	262, 323
Hpy188I	TCNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	262, 323
HpyCH4III	ACNGT	2 cut(s)	176, 266
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	39, 315, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 249
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	125, 129
LmnI	GCTCC	2 cut(s)	239, 275
LpnPI	CCDG	7 cut(s)	152, 196, 205, 244, 250, 268, 286
Lsp1109I	GCAGC	3 cut(s)	252, 255, 299
MaeI	CTAG	2 cut(s)	105, 350
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	127, 131
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	125, 129
MboII	GAAGA	3 cut(s)	37, 122, 125
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	37, 280, 283, 289, 295
MslI	CAYNNNNRTG	3 cut(s)	57, 150, 352
MspI	CCGG	2 cut(s)	231, 273
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	240, 249
NdeII	GATC	2 cut(s)	125, 129
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	209, 242, 245, 314
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	101
RseI	CAYNNNNRTG	3 cut(s)	57, 150, 352
SatI	GCNGC	4 cut(s)	208, 241, 244, 313
Sau3AI	GATC	2 cut(s)	125, 129
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	161
SetI	ASST	3 cut(s)	70, 123, 188
SmiMI	CAYNNNNRTG	3 cut(s)	57, 150, 352
SpeI	ACTAGT	1 cut(s)	349
SsiI	CCGC	4 cut(s)	17, 57, 79, 207
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	105, 350
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	176, 266
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	128, 170
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	215
TseI	GCWGC	3 cut(s)	240, 243, 312
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	105, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.