Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0021651

Physical Location & Seq

Genomic Coordinates Forward (+)

87000 .. 87710

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgaaggcgcaccgaataatcgagacagttcagggtcaacaacccaaggaaggtcattgcagtcacgccgacgtatgctcggactttttccaagcgctacatttgaccggagttatgcactcgcttatgcttgtaccttacgaagtcgtttggatcgtggttaaggccggtggggttactaatgagacggcttccattatttccaagtcagggcttaacattgttcacattggcttcgatcaggggatgcctaatacttgggatggtcgccaccgcttggaggctcaaatacggcttcgtgctttgagcatggagctctttgatgagatgcagaatgtgaaatggtttggtgctgttgcagttggaatacttgctcattcggataatacagatggatcgtctgagtccgtgattcagagcatggttgtggtgaaggtagggatctgggggatgtgcaggtggtgtttacggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000271 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009791 GO:0009832 GO:0009834 GO:0009987 GO:0010051 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022414 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0048316 GO:0048354 GO:0048359 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

6.43

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021651)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002343.1_g000014
rosa_samantha	Rh2CG203900 Rh2DG207000 Rh3DG346600
rosa_wichuraiana	Rw3G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	277
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	3 cut(s)	161, 403, 449
AfaI	GTAC	1 cut(s)	135
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	17, 179
AlwI	GGATC	3 cut(s)	161, 403, 449
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	10, 97
AsuHPI	GGTGA	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BccI	CCATC	2 cut(s)	257, 386
BceAI	ACGGC	2 cut(s)	204, 308
BcoDI	GTCTC	2 cut(s)	17, 179
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	447
BmsI	GCATC	2 cut(s)	237, 318
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
Bse118I	RCCGGY	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	3 cut(s)	252, 268, 456
BseLI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	108, 168
BslI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
BsmAI	GTCTC	2 cut(s)	17, 179
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	153, 238, 395, 441
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	447
BspPI	GGATC	3 cut(s)	161, 403, 449
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	153, 238, 395, 441
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	252, 268, 456
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	10, 97
BstKTI	GATC	4 cut(s)	156, 241, 398, 444
BstMAI	GTCTC	2 cut(s)	17, 179
BstMBI	GATC	4 cut(s)	153, 238, 395, 441
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	252, 268, 456
BveI	ACCTGC	1 cut(s)	447
CfoI	GCGC	2 cut(s)	10, 97
Cfr10I	RCCGGY	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	310, 421
CviJI	RGCY	7 cut(s)	167, 191, 214, 234, 284, 295, 316
CviKI_1	RGCY	7 cut(s)	167, 191, 214, 234, 284, 295, 316
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	155, 240, 397, 443
DpnII	GATC	4 cut(s)	153, 238, 395, 441
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	318
Eco47III	AGCGCT	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	313, 424
FaiI	YATR	5 cut(s)	76, 116, 128, 311, 422
FatI	CATG	2 cut(s)	309, 420
FokI	GGATG	3 cut(s)	259, 275, 463
FriOI	GRGCYC	1 cut(s)	318
GlaI	GCGC	2 cut(s)	9, 96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	108, 168
HhaI	GCGC	2 cut(s)	10, 97
Hin1II	CATG	2 cut(s)	313, 424
Hin6I	GCGC	2 cut(s)	8, 95
HinP1I	GCGC	2 cut(s)	8, 95
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	404, 412
HpaII	CCGG	2 cut(s)	108, 168
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	38, 226, 467
Hpy188I	TCNGA	4 cut(s)	82, 382, 403, 417
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	3 cut(s)	38, 226, 467
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	44, 427
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	60, 118, 331, 359, 456
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	313, 424
HspAI	GCGC	2 cut(s)	8, 95
Kzo9I	GATC	4 cut(s)	153, 238, 395, 441
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	7 cut(s)	17, 121, 181, 195, 227, 430, 442
LweI	GCATC	2 cut(s)	237, 318
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	62, 175
MalI	GATC	4 cut(s)	155, 240, 397, 443
MboI	GATC	4 cut(s)	153, 238, 395, 441
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	162, 216
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	2 cut(s)	108, 168
NdeII	GATC	4 cut(s)	153, 238, 395, 441
NlaIII	CATG	2 cut(s)	313, 424
NmuCI	GTSAC	1 cut(s)	62
PaqCI	CACCTGC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	277
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	162, 216
Sau3AI	GATC	4 cut(s)	153, 238, 395, 441
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	55, 75, 139, 318, 438, 461
SfaNI	GCATC	2 cut(s)	237, 318
SmiMI	CAYNNNNRTG	1 cut(s)	425
SsiI	CCGC	1 cut(s)	274
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	21, 237
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	2 cut(s)	162, 216
Tru9I	TTAA	2 cut(s)	162, 216
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.