Rh2CG203900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0021651
Physical Location & Seq
Reverse (-)
19861090 .. 19861674
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG203900.1

Sequence Viewer

Length: 555 bp
ATGCTCAACACCCTAATACTACTCCAGAAGTACATCTACTCTTTATTGGGTATTAGGCAGATTATTCACCTCGAAAGCTCGGGAAATCCCATGGACAACCAAGTTGTTCGAATAATAGATGTCGAGCGCCATGATCCTCACTCCATTGAGGACCAATTCCGACATGAAACTCATAAACCCAGTGACTCCCAGAGGCTGATCACCATGAACCATAGTCCTGAGCAAAGTCCTCGCAGGCAAAGCCGAAAGCTCACTGTGTGTAAACCTCTGAGGCACAATGTGAAACCTCACAATCTTCTCAAGCAAAGATTGAGGATGATGATGAGCTCCAAGCTTCAATCTTGGTGCACAAAAATCGTCACAGAGCTCACATTTCTCTCATCTTCAAGAACGGGCCAAGAACATTGTGAAGGGGCCAAGAACACCTTGAATCGAAAAGGATCCTTCCACATACAGATTCCAGTGCGAGACCCAAACCCAGTTAATCTGGATCGTTCGACTCTTCCGATCAATTCTTATGATCGCAAGGCTCTTTTTCCGGTAAAGAGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.48

Weight (kDa)

10.06

Isoelectric Point (pI)

65.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021651)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002343.1_g000014
rosa_samantha Rh2CG203900 Rh2DG207000 Rh3DG346600
rosa_wichuraiana Rw3G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 128, 435, 448, 498
AdeI CACNNNGTG 2 cut(s) 258, 280
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 3 cut(s) 338, 387, 430
AluBI AGCT 5 cut(s) 78, 250, 327, 334, 367
AluI AGCT 5 cut(s) 78, 250, 327, 334, 367
Alw21I GWGCWC 3 cut(s) 329, 350, 369
Alw26I GTCTC 1 cut(s) 462
Alw44I GTGCAC 1 cut(s) 346
AlwI GGATC 4 cut(s) 128, 435, 448, 498
AlwNI CAGNNNCTG 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 2 cut(s) 394, 414
ApaLI GTGCAC 1 cut(s) 346
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 3 cut(s) 151, 394, 414
AsuHPI GGTGA 2 cut(s) 59, 193
AsuII TTCGAA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 350
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 329, 369
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
Bbv12I GWGCWC 3 cut(s) 329, 350, 369
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 337, 371
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 151, 394, 414
BmiI GGNNCC 2 cut(s) 415, 442
BmrI ACTGGG 2 cut(s) 174, 473
BmuI ACTGGG 2 cut(s) 174, 473
BpmI CTGGAG 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 538
Bse1I ACTGG 3 cut(s) 180, 461, 479
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 210, 260
BseNI ACTGG 3 cut(s) 180, 461, 479
BseSI GKGCMC 1 cut(s) 350
BshFI GGCC 2 cut(s) 396, 416
BsiHKAI GWGCWC 3 cut(s) 329, 350, 369
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 462
BsnI GGCC 2 cut(s) 396, 416
Bso31I GGTCTC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 109
Bsp1286I GDGCHC 3 cut(s) 329, 350, 369
Bsp143I GATC 6 cut(s) 133, 198, 440, 490, 507, 520
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 396, 416
BspCNI CTCAG 2 cut(s) 211, 261
BspLI GGNNCC 2 cut(s) 415, 442
BspPI GGATC 4 cut(s) 128, 435, 448, 498
BspT104I TTCGAA 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 462
BsrI ACTGG 3 cut(s) 180, 461, 479
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 6 cut(s) 133, 198, 440, 490, 507, 520
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 219, 269
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 6 cut(s) 136, 201, 443, 493, 510, 523
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 6 cut(s) 133, 198, 440, 490, 507, 520
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 2 cut(s) 396, 416
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 187, 252, 468
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 196
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 151, 394, 414
Csp6I GTAC 1 cut(s) 31
CviAII CATG 4 cut(s) 91, 131, 164, 205
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 219, 269
DpnI GATC 6 cut(s) 135, 200, 442, 492, 509, 522
DpnII GATC 6 cut(s) 133, 198, 440, 490, 507, 520
DraIII CACNNNGTG 2 cut(s) 258, 280
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 2 cut(s) 327, 367
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 329, 369
Eco31I GGTCTC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 2 cut(s) 327, 367
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 2 cut(s) 327, 367
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 329, 369
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 94, 134, 167, 208
FaiI YATR 8 cut(s) 92, 132, 165, 174, 206, 213, 452, 519
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 4 cut(s) 90, 130, 163, 204
FbaI TGATCA 1 cut(s) 198
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 2 cut(s) 329, 369
GlaI GCGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 2 cut(s) 396, 416
HapII CCGG 1 cut(s) 539
HhaI GCGC 1 cut(s) 129
Hin1II CATG 4 cut(s) 94, 134, 167, 208
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 4 cut(s) 185, 430, 457, 499
HpaII CCGG 1 cut(s) 539
HphI GGTGA 2 cut(s) 59, 193
Hpy166II GTNNAC 2 cut(s) 263, 348
Hpy188I TCNGA 3 cut(s) 161, 270, 507
Hpy188III TCNNGA 5 cut(s) 25, 81, 218, 387, 488
Hpy8I GTNNAC 2 cut(s) 263, 348
HpyAV CCTTC 2 cut(s) 404, 454
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 219, 269
Hsp92II CATG 4 cut(s) 94, 134, 167, 208
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 6 cut(s) 133, 198, 440, 490, 507, 520
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 8 cut(s) 38, 193, 203, 220, 231, 473, 474, 492
MaeIII GTNAC 2 cut(s) 182, 358
MalI GATC 6 cut(s) 135, 200, 442, 492, 509, 522
MboI GATC 6 cut(s) 133, 198, 440, 490, 507, 520
MboII GAAGA 3 cut(s) 287, 375, 494
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 3 cut(s) 329, 350, 369
MluCI AATT 2 cut(s) 155, 511
MlyI GAGTC 2 cut(s) 179, 493
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 9 cut(s) 80, 142, 147, 186, 240, 264, 276, 297, 306
MseI TTAA 1 cut(s) 483
MspI CCGG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 90
NdeII GATC 6 cut(s) 133, 198, 440, 490, 507, 520
NlaIII CATG 4 cut(s) 94, 134, 167, 208
NlaIV GGNNCC 2 cut(s) 415, 442
NmuCI GTSAC 2 cut(s) 182, 358
NspV TTCGAA 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PfeI GAWTC 2 cut(s) 430, 457
PleI GAGTC 2 cut(s) 179, 493
PpsI GAGTC 2 cut(s) 179, 493
Psp124BI GAGCTC 2 cut(s) 329, 369
PspN4I GGNNCC 2 cut(s) 415, 442
PspPI GGNCC 3 cut(s) 151, 394, 414
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacI GAGCTC 2 cut(s) 329, 369
SaqAI TTAA 1 cut(s) 483
Sau3AI GATC 6 cut(s) 133, 198, 440, 490, 507, 520
Sau96I GGNCC 3 cut(s) 151, 394, 414
SchI GAGTC 2 cut(s) 179, 493
SduI GDGCHC 3 cut(s) 329, 350, 369
SetI ASST 9 cut(s) 72, 80, 252, 268, 289, 329, 336, 369, 428
SfuI TTCGAA 1 cut(s) 109
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 2 cut(s) 155, 511
SstI GAGCTC 2 cut(s) 329, 369
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 5 cut(s) 72, 109, 123, 433, 497
TasI AATT 2 cut(s) 155, 511
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 2 cut(s) 430, 457
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 3 cut(s) 187, 259, 468
TseFI GTSAC 2 cut(s) 182, 358
Tsp45I GTSAC 2 cut(s) 182, 358
TspDTI ATGAA 2 cut(s) 180, 221
TspRI CASTG 3 cut(s) 187, 259, 468
VneI GTGCAC 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.