Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0021651

Physical Location & Seq

Genomic Coordinates Reverse (-)

37560170 .. 37568687

Gene Structure 8518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTTGTACCTTACGAAGTCGTTTGGATCGTGGTTAAGGCCGGTGGGGTTACTAATGAGATGGCTTCCATTATTTCCAAGTCAGGGCTTAACATTGTTCACATTGGCTTCGATCAGGGGATGCCTAATACTTGGGATGGTCGCCACCGCTTGGAGGCTCGAATACGGCTTCGTGCTTTGAGAGTTGTGAGAAAACAAAAGTTGGGTGCGATTGTGATGTTTGCGAACGATTGTAATATGCACAGCATAGAGCTCTTTGATGAGATGCAGAATGTGAAATGGTTTGGTGCTGTTGCAGTTGGAATACTTGCTCATTCGGATAATACAGATGGATCGTCTGAGTCCGTGATTCAGAGCATGGTTGTGGTGAAGGATTTATCTGATGATTTCACAATGACAGTGTTGAACATTTCAAGTCTGCCAATGTTTCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTTTATCAGGCGCTTCAAGACAGTTCTTGAAAAACTTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000271 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009791 GO:0009832 GO:0009834 GO:0009987 GO:0010051 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022414 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0048316 GO:0048354 GO:0048359 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

172

Amino Acids

19.42

Weight (kDa)

6.51

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	1 - 116	3.5e-25	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021651)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002343.1_g000014
rosa_samantha	Rh2CG203900 Rh2DG207000 Rh3DG346600
rosa_wichuraiana	Rw3G026980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	2 cut(s)	35, 340
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	84, 151, 154
AgsI	TTSAA	4 cut(s)	406, 414, 490, 503
AluBI	AGCT	3 cut(s)	253, 463, 467
AluI	AGCT	3 cut(s)	253, 463, 467
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	35, 340
AoxI	GGCC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	379, 482
AsuNHI	GCTAGC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	3 cut(s)	55, 131, 323
BceAI	ACGGC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	487
BmsI	GCATC	2 cut(s)	111, 255
BmtI	GCTAGC	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 151, 154
Bse118I	RCCGGY	1 cut(s)	41
BseGI	GGATG	2 cut(s)	126, 142
BseLI	CCNNNNNNNGG	3 cut(s)	84, 151, 154
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	84, 151, 154
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	27, 112, 332
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	35, 340
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssMI	GATC	3 cut(s)	27, 112, 332
Bst4CI	ACNGT	2 cut(s)	400, 496
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	126, 142
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	3 cut(s)	30, 115, 335
BstMBI	GATC	3 cut(s)	27, 112, 332
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	126, 142
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	9 cut(s)	41, 65, 88, 108, 158, 169, 253, 463, 467
CviKI_1	RGCY	9 cut(s)	41, 65, 88, 108, 158, 169, 253, 463, 467
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	29, 114, 334
DpnII	GATC	3 cut(s)	27, 112, 332
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	361
FaiI	YATR	3 cut(s)	239, 248, 359
FatI	CATG	1 cut(s)	357
FokI	GGATG	2 cut(s)	133, 149
FriOI	GRGCYC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	341, 349
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	379, 482
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	319, 340, 354, 382
Hpy188III	TCNNGA	2 cut(s)	490, 500
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	400, 496
HpyCH4V	TGCA	3 cut(s)	241, 268, 296
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	27, 112, 332
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	5 cut(s)	55, 69, 101, 453, 466
LweI	GCATC	2 cut(s)	111, 255
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	29, 114, 334
MboI	GATC	3 cut(s)	27, 112, 332
MhlI	GDGCHC	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	2 cut(s)	148, 451
MseI	TTAA	2 cut(s)	36, 90
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	1 cut(s)	42
NdeII	GATC	3 cut(s)	27, 112, 332
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	255
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	36, 90
Sau3AI	GATC	3 cut(s)	27, 112, 332
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	5 cut(s)	13, 255, 456, 465, 469
SfaNI	GCATC	2 cut(s)	111, 255
SmiMI	CAYNNNNRTG	1 cut(s)	362
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	400, 496
TaqI	TCGA	2 cut(s)	111, 160
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	36, 90
Tru9I	TTAA	2 cut(s)	36, 90
TscAI	CASTG	1 cut(s)	405
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	405
Van91I	CCANNNNNTGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.