Rh2DG207000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0021651
Physical Location & Seq
Reverse (-)
19448356 .. 19448949
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG207000.1

Sequence Viewer

Length: 594 bp
ATGCTCAACACCCTAATACTACTCCAGAAGTACATCTACTCTTTATTGGGTATTAGGCAGATCATTCACCTCGAAAGCTCGGGAAATCCCATGGACAACCAAGTTGTTCGAAGAATAGATGTCGAGCGCCATGATCCTCACTCCATTGAGGACCAATTCCGACATGAAACTCATAAACCCAATGACTTCCAGAGGCTGATCACCATGAACCATAGTCCTGAGCAAAGTCCTCGCAGGCAAAGCCGAAAGCTCCCTGTGTGTAAACCTCTGAGGCACAATGTGAAACCTCACAATCTTCTCAAGCAAAGATTAAGGATGATGATGAGCTCCAAGCTCCAATCTTGGTGGCACAAAAATCGTCACAGAGCTCACATTTCTCTCATCTTCAAGAACGGGCCAAGACGTTGTGAAGGGGCCAAGAACACCTTGAATCGAAAAGGATCCTTCCACAAACAGATTCTAGTGCGAGACGCAAACCCGGTTGATCTGGATCGTTCGACTCTTCTGATCAATTCTTATGATCGTGAGGCTATTTTTCCAGTAAAGAGTTGGCAAGCAAGAACATTGAGGCTTCTCCATCAGGTCTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

23.49

Weight (kDa)

10.79

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021651)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002343.1_g000014
rosa_samantha Rh2CG203900 Rh2DG207000 Rh3DG346600
rosa_wichuraiana Rw3G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 128, 435, 448, 498
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 2 cut(s) 388, 430
AluBI AGCT 5 cut(s) 78, 250, 327, 334, 368
AluI AGCT 5 cut(s) 78, 250, 327, 334, 368
Alw21I GWGCWC 2 cut(s) 329, 370
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 4 cut(s) 128, 435, 448, 498
AlwNI CAGNNNCTG 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 2 cut(s) 395, 414
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 3 cut(s) 151, 395, 414
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 59, 193
AsuII TTCGAA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 151
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 329, 370
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BbsI GAAGAC 1 cut(s) 577
Bbv12I GWGCWC 2 cut(s) 329, 370
BccI CCATC 1 cut(s) 585
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 338, 372
BclI TGATCA 2 cut(s) 198, 507
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 151, 395, 414
BmiI GGNNCC 2 cut(s) 415, 442
BmrFI CCNGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 539
Bse8I GATNNNNATC 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 489
BseMII CTCAG 2 cut(s) 210, 260
BseNI ACTGG 1 cut(s) 539
BshFI GGCC 2 cut(s) 397, 416
BsiHKAI GWGCWC 2 cut(s) 329, 370
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 462
BsmBI CGTCTC 1 cut(s) 462
BsnI GGCC 2 cut(s) 397, 416
BsoBI CYCGRG 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 109
Bsp1286I GDGCHC 2 cut(s) 329, 370
Bsp143I GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 397, 416
BspCNI CTCAG 2 cut(s) 211, 261
BspLI GGNNCC 2 cut(s) 415, 442
BspPI GGATC 4 cut(s) 128, 435, 448, 498
BspT104I TTCGAA 1 cut(s) 109
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 236, 555
BstDEI CTNAG 2 cut(s) 219, 269
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 8 cut(s) 63, 136, 201, 443, 487, 493, 510, 523
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 2 cut(s) 397, 416
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 236, 555
CaiI CAGNNNCTG 1 cut(s) 196
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 151, 395, 414
CseI GACGC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 326, 361
CviAII CATG 4 cut(s) 91, 131, 164, 205
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 219, 269
DpnI GATC 8 cut(s) 62, 135, 200, 442, 486, 492, 509, 522
DpnII GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
DraIII CACNNNGTG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 2 cut(s) 327, 368
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 329, 370
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 2 cut(s) 327, 368
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 2 cut(s) 327, 368
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 329, 370
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 462
FaeI CATG 4 cut(s) 94, 134, 167, 208
FaiI YATR 7 cut(s) 92, 132, 165, 174, 206, 213, 519
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 4 cut(s) 90, 130, 163, 204
FbaI TGATCA 2 cut(s) 198, 507
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 2 cut(s) 329, 370
FspBI CTAG 1 cut(s) 461
GlaI GCGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 2 cut(s) 397, 416
HapII CCGG 1 cut(s) 479
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 129
Hin1II CATG 4 cut(s) 94, 134, 167, 208
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 3 cut(s) 430, 457, 499
HpaII CCGG 1 cut(s) 479
HphI GGTGA 2 cut(s) 59, 193
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 161, 270, 507
Hpy188III TCNNGA 7 cut(s) 25, 81, 190, 218, 388, 488, 524
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 404, 454
HpyCH4IV ACGT 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 219, 269
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 4 cut(s) 94, 134, 167, 208
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 2 cut(s) 198, 507
Kzo9I GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
LmnI GCTCC 3 cut(s) 255, 332, 339
LpnPI CCDG 9 cut(s) 38, 203, 220, 231, 267, 473, 492, 552, 566
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 359
MalI GATC 8 cut(s) 62, 135, 200, 442, 486, 492, 509, 522
MboI GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
MboII GAAGA 5 cut(s) 123, 287, 376, 494, 577
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 2 cut(s) 329, 370
MluCI AATT 2 cut(s) 155, 511
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 184
MseI TTAA 1 cut(s) 311
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 479
NcoI CCATGG 1 cut(s) 90
NdeII GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
NlaIII CATG 4 cut(s) 94, 134, 167, 208
NlaIV GGNNCC 2 cut(s) 415, 442
NmuCI GTSAC 1 cut(s) 359
NspV TTCGAA 1 cut(s) 109
PfeI GAWTC 2 cut(s) 430, 457
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp124BI GAGCTC 2 cut(s) 329, 370
PspN4I GGNNCC 2 cut(s) 415, 442
PspPI GGNCC 3 cut(s) 151, 395, 414
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacI GAGCTC 2 cut(s) 329, 370
SaqAI TTAA 1 cut(s) 311
Sau3AI GATC 8 cut(s) 60, 133, 198, 440, 484, 490, 507, 520
Sau96I GGNCC 3 cut(s) 151, 395, 414
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 2 cut(s) 329, 370
SfuI TTCGAA 1 cut(s) 109
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 2 cut(s) 155, 511
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 2 cut(s) 329, 370
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 406
TaqI TCGA 6 cut(s) 72, 109, 123, 433, 497, 588
TasI AATT 2 cut(s) 155, 511
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 2 cut(s) 430, 457
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 180, 221
VpaK11BI GGWCC 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.