Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0021651

Physical Location & Seq

Genomic Coordinates Reverse (-)

39345063 .. 39350133

Gene Structure 5071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGGCGCACCGAATAATCGAGACAGTTCAGGGTCAACAACCCAAGGAAGGTCATTGCAGTCACGCCGACGTATGCTCGGACTTTTTCCAAGCGCTACATTTGACCGGAGTTATGCACTCGCTTATGCTTGTACCTTACGAAGTCGTTTGGATCGTGGTTAAGGCCGGTGGGGTTACTAATGAGACGGCTTCCATTATTTCCAAGTCAGGGCTTAACATTGTTCACATTGGCTTCGATCAGGGGATGCCTAATACTTGGGATGGTCGCCACCGCTTGGAGGCTCAAATACGGCTTCGTGCTTTGAGGCAGATCATTCACCTCGAAAGCTCGGGAAACCCCATGGACAACCAAGTTGTTCGAAGAATAGATGTCGAGCGCCACGATCCTCACTCCATTGATGACCAATTCCGGCATGAAACTCATAAAAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000271 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009791 GO:0009832 GO:0009834 GO:0009987 GO:0010051 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022414 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0048316 GO:0048354 GO:0048359 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

6.62

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	38 - 107	2.4e-09	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021651)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002343.1_g000014
rosa_samantha	Rh2CG203900 Rh2DG207000 Rh3DG346600
rosa_wichuraiana	Rw3G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	161, 380
AfaI	GTAC	1 cut(s)	135
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	17, 179
AlwI	GGATC	2 cut(s)	161, 380
Ama87I	CYCGRG	1 cut(s)	331
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	10, 97, 381
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	331
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	2 cut(s)	204, 308
BcoDI	GTCTC	2 cut(s)	17, 179
BfoI	RGCGCY	2 cut(s)	98, 382
BmeT110I	CYCGRG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	45, 342
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	45, 342
BseGI	GGATG	2 cut(s)	252, 268
BseLI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	108, 168, 412
BslI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
BsmAI	GTCTC	2 cut(s)	17, 179
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	153, 238, 312, 385
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	161, 380
BspT104I	TTCGAA	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	45, 342
BssMI	GATC	4 cut(s)	153, 238, 312, 385
BssT1I	CCWWGG	2 cut(s)	45, 342
Bst4CI	ACNGT	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	252, 268
BstH2I	RGCGCY	2 cut(s)	98, 382
BstHHI	GCGC	3 cut(s)	10, 97, 381
BstKTI	GATC	4 cut(s)	156, 241, 315, 388
BstMAI	GTCTC	2 cut(s)	17, 179
BstMBI	GATC	4 cut(s)	153, 238, 312, 385
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	252, 268
CfoI	GCGC	3 cut(s)	10, 97, 381
Cfr10I	RCCGGY	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	343, 416
CviJI	RGCY	7 cut(s)	167, 191, 214, 234, 284, 295, 330
CviKI_1	RGCY	7 cut(s)	167, 191, 214, 234, 284, 295, 330
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	4 cut(s)	155, 240, 314, 387
DpnII	GATC	4 cut(s)	153, 238, 312, 385
Eco130I	CCWWGG	2 cut(s)	45, 342
Eco47III	AGCGCT	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	45, 342
ErhI	CCWWGG	2 cut(s)	45, 342
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	346, 419
FaiI	YATR	6 cut(s)	76, 116, 128, 344, 417, 426
FatI	CATG	2 cut(s)	342, 415
FokI	GGATG	2 cut(s)	259, 275
GlaI	GCGC	3 cut(s)	9, 96, 380
HaeII	RGCGCY	2 cut(s)	98, 382
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	3 cut(s)	108, 168, 412
HhaI	GCGC	3 cut(s)	10, 97, 381
Hin1II	CATG	2 cut(s)	346, 419
Hin6I	GCGC	3 cut(s)	8, 95, 379
HinP1I	GCGC	3 cut(s)	8, 95, 379
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HpaII	CCGG	3 cut(s)	108, 168, 412
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	38, 226
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	22, 333
Hpy8I	GTNNAC	2 cut(s)	38, 226
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	60, 118
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	346, 419
HspAI	GCGC	3 cut(s)	8, 95, 379
Kzo9I	GATC	4 cut(s)	153, 238, 312, 385
LpnPI	CCDG	6 cut(s)	17, 121, 181, 195, 227, 425
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	62, 175
MalI	GATC	4 cut(s)	155, 240, 314, 387
MboI	GATC	4 cut(s)	153, 238, 312, 385
MboII	GAAGA	1 cut(s)	375
MluCI	AATT	1 cut(s)	407
MnlI	CCTC	4 cut(s)	274, 300, 332, 399
MseI	TTAA	2 cut(s)	162, 216
MspI	CCGG	3 cut(s)	108, 168, 412
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	4 cut(s)	153, 238, 312, 385
NlaIII	CATG	2 cut(s)	346, 419
NmuCI	GTSAC	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 381
PflMI	CCANNNNNTGG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	162, 216
Sau3AI	GATC	4 cut(s)	153, 238, 312, 385
SetI	ASST	5 cut(s)	55, 75, 139, 324, 332
SfaNI	GCATC	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	361
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	45, 342
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	5 cut(s)	21, 237, 324, 361, 375
TasI	AATT	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	162, 216
Tru9I	TTAA	2 cut(s)	162, 216
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	17, 432
Van91I	CCANNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.