Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0021651

Physical Location & Seq

Genomic Coordinates Forward (+)

87000 .. 87710

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgaaggcgcaccgaataatcgagacagttcagggtcaacaacccaaggaaggtcattgcagtcacgccgacgtatgctcggactttttccaagcgctacatttgaccggagttatgcactcgcttatgcttgtaccttacgaagtcgtttggatcgtggttaaggccggtggggttactaatgagacggcttccattatttccaagtcagggcttaacattgttcacattggcttcgatcaggggatgcctaatacttgggatggtcgccaccgcttggaggctcaaatacggcttcgtgctttgagcatggagctctttgatgagatgcagaatgtgaaatggtttggtgctgttgcagttggaatacttgctcattcggataatacagatggatcgtctgagtccgtgattcagagcatggttgtggtgaaggtagggatctgggggatgtgcaggtggtgtttacggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000271 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009791 GO:0009832 GO:0009834 GO:0009987 GO:0010051 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022414 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0047517 GO:0048316 GO:0048354 GO:0048359 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

6.43

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	38 - 103	3e-08	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021651)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002343.1_g000014
rosa_samantha	Rh2CG203900 Rh2DG207000 Rh3DG346600
rosa_wichuraiana	Rw3G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	277
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	3 cut(s)	161, 403, 449
AfaI	GTAC	1 cut(s)	135
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	17, 179
AlwI	GGATC	3 cut(s)	161, 403, 449
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	10, 97
AsuHPI	GGTGA	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BccI	CCATC	2 cut(s)	257, 386
BceAI	ACGGC	2 cut(s)	204, 308
BcoDI	GTCTC	2 cut(s)	17, 179
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	447
BmsI	GCATC	2 cut(s)	237, 318
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
Bse118I	RCCGGY	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	3 cut(s)	252, 268, 456
BseLI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	108, 168
BslI	CCNNNNNNNGG	4 cut(s)	50, 210, 277, 280
BsmAI	GTCTC	2 cut(s)	17, 179
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	153, 238, 395, 441
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	447
BspPI	GGATC	3 cut(s)	161, 403, 449
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	153, 238, 395, 441
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	252, 268, 456
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	10, 97
BstKTI	GATC	4 cut(s)	156, 241, 398, 444
BstMAI	GTCTC	2 cut(s)	17, 179
BstMBI	GATC	4 cut(s)	153, 238, 395, 441
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	252, 268, 456
BveI	ACCTGC	1 cut(s)	447
CfoI	GCGC	2 cut(s)	10, 97
Cfr10I	RCCGGY	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	310, 421
CviJI	RGCY	7 cut(s)	167, 191, 214, 234, 284, 295, 316
CviKI_1	RGCY	7 cut(s)	167, 191, 214, 234, 284, 295, 316
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	155, 240, 397, 443
DpnII	GATC	4 cut(s)	153, 238, 395, 441
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	318
Eco47III	AGCGCT	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	313, 424
FaiI	YATR	5 cut(s)	76, 116, 128, 311, 422
FatI	CATG	2 cut(s)	309, 420
FokI	GGATG	3 cut(s)	259, 275, 463
FriOI	GRGCYC	1 cut(s)	318
GlaI	GCGC	2 cut(s)	9, 96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	108, 168
HhaI	GCGC	2 cut(s)	10, 97
Hin1II	CATG	2 cut(s)	313, 424
Hin6I	GCGC	2 cut(s)	8, 95
HinP1I	GCGC	2 cut(s)	8, 95
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	404, 412
HpaII	CCGG	2 cut(s)	108, 168
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	38, 226, 467
Hpy188I	TCNGA	4 cut(s)	82, 382, 403, 417
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	3 cut(s)	38, 226, 467
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	44, 427
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	60, 118, 331, 359, 456
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	313, 424
HspAI	GCGC	2 cut(s)	8, 95
Kzo9I	GATC	4 cut(s)	153, 238, 395, 441
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	7 cut(s)	17, 121, 181, 195, 227, 430, 442
LweI	GCATC	2 cut(s)	237, 318
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	62, 175
MalI	GATC	4 cut(s)	155, 240, 397, 443
MboI	GATC	4 cut(s)	153, 238, 395, 441
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	162, 216
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	2 cut(s)	108, 168
NdeII	GATC	4 cut(s)	153, 238, 395, 441
NlaIII	CATG	2 cut(s)	313, 424
NmuCI	GTSAC	1 cut(s)	62
PaqCI	CACCTGC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	277
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	162, 216
Sau3AI	GATC	4 cut(s)	153, 238, 395, 441
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	55, 75, 139, 318, 438, 461
SfaNI	GCATC	2 cut(s)	237, 318
SmiMI	CAYNNNNRTG	1 cut(s)	425
SsiI	CCGC	1 cut(s)	274
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	21, 237
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	2 cut(s)	162, 216
Tru9I	TTAA	2 cut(s)	162, 216
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.