Rmu_sc0002354.1_g000018

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002354.1
OG0014095
Physical Location & Seq
Reverse (-)
76274 .. 76936
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002354.1_g000018.1.cds

Sequence Viewer

Length: 498 bp
atgatcatggatgctatcgccggaatacttggcatccaggctgaaatagcccaaaacaaggtgaagcatttgaaggcgtggattatcgagtgcagagacccgagttaccaagctttcaaactcggtttagctgcggctgtgctactagcgctggcacacaccattgggaacttgctcggtgggtgcatttgcctctggtctaagcaagacttcaccaaggccacaacagctaacaagaagctagcttttgggtccctgattctctcatggataactttagcactgggattttcactgttaatcattggaacaatggcaaactcaaaatcaagaaaatcttgctcattagcacacggtcgagtcctatcaataggaggaatcatctgcttcttccacggattgttcacagtggcatactacgtctcagcaaaggccacaatcagagatgaagaaaagcgcaggaaccctacaaaccaagccggccattctgcggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

165

Amino Acids

17.73

Weight (kDa)

9.68

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21310 AT4G21310
fragaria_vesca FvH4_3g02950
malus_domestica MD10G1311300.v1.1
prunus_persica Prupe.4G029600_v2.0.a1
pyrus_communis pycom10g26250
rosa_chinensis RchiOBHm_Chr5g0004561
rosa_laevigata RLG00000031240
rosa_multiflora Rmu_sc0002354.1_g000018 Rmu_sc0003758.1_g000012
rosa_roxburghii Rroxscaffold_1G00070970
rosa_rugosa Rorug04G0412200
rosa_samantha Rh5AG040200 Rh5BG039600 Rh5CG043500 Rh5DG039300
rosa_wichuraiana Rw5G003860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 491
AcoI YGGCCR 1 cut(s) 481
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 58, 490
AgsI TTSAA 2 cut(s) 73, 118
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 5 cut(s) 113, 131, 230, 241, 245
AluI AGCT 5 cut(s) 113, 131, 230, 241, 245
Alw26I GTCTC 2 cut(s) 90, 427
Ama87I CYCGRG 1 cut(s) 100
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 3 cut(s) 219, 432, 481
ApeKI GCWGC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 151, 459
AspS9I GGNCC 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 73, 205
AsuNHI GCTAGC 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 90, 427
BfaI CTAG 2 cut(s) 146, 242
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 3 cut(s) 132, 135, 492
BlsI GCNGC 3 cut(s) 133, 136, 493
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 3 cut(s) 253, 254, 464
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 42
BmtI GCTAGC 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 216, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 490
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 216, 394
BseGI GGATG 2 cut(s) 16, 33
BseLI CCNNNNNNNGG 2 cut(s) 58, 490
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 3 cut(s) 221, 434, 483
BsiEI CGRYCG 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 21, 480
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 58, 490
BsmAI GTCTC 2 cut(s) 90, 427
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 3 cut(s) 221, 434, 483
Bso31I GGTCTC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 100
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 134, 491
BspANI GGCC 3 cut(s) 221, 434, 483
BspCNI CTCAG 1 cut(s) 437
BspLI GGNNCC 3 cut(s) 253, 254, 464
BspOI GCTAGC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 479
BsrI ACTGG 1 cut(s) 288
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 216, 394
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 297, 356, 409
BstC8I GCNNGC 3 cut(s) 153, 243, 481
BstDEI CTNAG 3 cut(s) 201, 424, 495
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 16, 33
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 151, 459
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 90, 427
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 3 cut(s) 47, 148, 227
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 3 cut(s) 221, 434, 483
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 2 cut(s) 16, 33
BtsIMutI CAGTG 3 cut(s) 281, 293, 414
Cac8I GCNNGC 3 cut(s) 153, 243, 481
CfoI GCGC 2 cut(s) 151, 459
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 252
CviAII CATG 2 cut(s) 7, 267
DdeI CTNAG 3 cut(s) 201, 424, 495
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 252
Eco47III AGCGCT 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 2 cut(s) 10, 270
FaiI YATR 3 cut(s) 8, 268, 415
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 322, 354
FaqI GGGAC 1 cut(s) 238
FatI CATG 2 cut(s) 6, 266
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 132, 135, 492
FokI GGATG 2 cut(s) 20, 23
Fsp4HI GCNGC 3 cut(s) 132, 135, 492
FspBI CTAG 2 cut(s) 146, 242
GlaI GCGC 2 cut(s) 150, 458
GluI GCNGC 3 cut(s) 132, 135, 492
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 221, 434, 483
HapII CCGG 2 cut(s) 21, 480
HhaI GCGC 2 cut(s) 151, 459
Hin1II CATG 2 cut(s) 10, 270
Hin6I GCGC 2 cut(s) 149, 457
HinP1I GCGC 2 cut(s) 149, 457
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 3 cut(s) 259, 360, 378
HpaII CCGG 2 cut(s) 21, 480
HphI GGTGA 2 cut(s) 73, 205
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 297, 356, 409
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 93, 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 148, 227
HpyF3I CTNAG 3 cut(s) 201, 424, 495
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 2 cut(s) 10, 270
HspAI GCGC 2 cut(s) 149, 457
KflI GGGWCCC 1 cut(s) 252
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 9 cut(s) 23, 34, 50, 137, 181, 269, 269, 445, 493
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 146, 242
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 382, 461
MlyI GAGTC 1 cut(s) 369
MnlI CCTC 2 cut(s) 203, 368
MroNI GCCGGC 1 cut(s) 479
MseI TTAA 1 cut(s) 299
MspI CCGG 2 cut(s) 21, 480
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 47, 148, 227
NaeI GCCGGC 1 cut(s) 481
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 479
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 10, 270
NlaIV GGNNCC 3 cut(s) 253, 254, 464
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 259, 378
PkrI GCNGC 3 cut(s) 133, 136, 493
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 253, 254, 464
PspPI GGNCC 1 cut(s) 252
PspPPI RGGWCCY 1 cut(s) 252
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 3 cut(s) 132, 135, 492
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 38
SetI ASST 7 cut(s) 63, 115, 133, 232, 243, 247, 423
SfaNI GCATC 1 cut(s) 42
SinI GGWCC 1 cut(s) 252
SsiI CCGC 2 cut(s) 134, 491
SspMI CTAG 2 cut(s) 146, 242
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 297, 356, 409
TaiI ACGT 1 cut(s) 423
TaqI TCGA 2 cut(s) 87, 358
TauI GCSGC 2 cut(s) 137, 494
TfiI GAWTC 2 cut(s) 259, 378
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 3 cut(s) 288, 300, 414
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 462
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 3 cut(s) 288, 300, 414
VpaK11BI GGWCC 1 cut(s) 252
XspI CTAG 2 cut(s) 146, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.