Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002462.1

Orthogroup ID

OG0019949

Physical Location & Seq

Genomic Coordinates Forward (+)

27095 .. 28136

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggtgacacggcaccgacattatggcccactagaaggctcttccatatcctcttcccttttgcactggaatgtccctgccttcctccgaccaactcgatccggcgaaggatgccattccggcgtgaggatggtgttcgtcatcaccgatctgatgaccgatatcttggtcaagtacaagggctccttgccggatttttttccaggagtggcactccgtggtggtggaggggttcaggggagtgtgtttgtgaagaaacgagtgctgatggcattggatgaatataatcaagatcagaataggggcaggaattcgggcggggcaacggaggcggaggatgactaccgcccagcacaggaggacgagacggaggtgttaggattgttgaggatggatgccaggctctgggtaacagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

139

Amino Acids

15.41

Weight (kDa)

6.07

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019949)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0244941
rosa_laevigata	RLG00000008402 RLG00000024958 RLG00000029546 RLG00000035092
rosa_multiflora	Rmu_sc0002462.1_g000007
rosa_roxburghii	Rroxscaffold_3G00242750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	405
AciI	CCGC	3 cut(s)	318, 332, 346
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	35, 126, 355, 405
AjnI	CCWGG	2 cut(s)	202, 398
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	16, 136
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	185
BccI	CCATC	3 cut(s)	124, 262, 385
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	204, 400
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	204, 400
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	14, 184
BmrFI	CCNGG	2 cut(s)	204, 400
BmsI	GCATC	2 cut(s)	101, 385
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 126, 355, 405
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	204, 400
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	6 cut(s)	116, 135, 283, 343, 396, 400
BseLI	CCNNNNNNNGG	4 cut(s)	35, 126, 355, 405
BseNI	ACTGG	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	102, 120, 191
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	35, 126, 355, 405
BsmAI	GTCTC	1 cut(s)	359
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	98, 148, 292
BspACI	CCGC	3 cut(s)	318, 332, 346
BspANI	GGCC	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	14, 184
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	98, 148, 292
Bst2UI	CCWGG	2 cut(s)	204, 400
Bst6I	CTCTTC	2 cut(s)	46, 58
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	6 cut(s)	116, 135, 283, 343, 396, 400
BstKTI	GATC	3 cut(s)	101, 151, 295
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	98, 148, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 120, 329
BstNI	CCWGG	2 cut(s)	204, 400
BstSCI	CCNGG	2 cut(s)	202, 398
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	6 cut(s)	116, 135, 283, 343, 396, 400
BtsIMutI	CAGTG	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	4 cut(s)	27, 39, 183, 403
CviKI_1	RGCY	4 cut(s)	27, 39, 183, 403
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	3 cut(s)	100, 150, 294
DpnII	GATC	3 cut(s)	98, 148, 292
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	46, 58
EarI	CTCTTC	2 cut(s)	46, 58
EciI	GGCGGA	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	202, 398
EcoRV	GATATC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	185
Esp3I	CGTCTC	1 cut(s)	359
FaiI	YATR	3 cut(s)	24, 47, 285
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	59
FauI	CCCGC	1 cut(s)	311
FokI	GGATG	6 cut(s)	123, 142, 290, 350, 403, 407
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	102, 120, 191
HpaII	CCGG	3 cut(s)	102, 120, 191
HphI	GGTGA	2 cut(s)	16, 136
Hpy188I	TCNGA	3 cut(s)	89, 153, 297
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	29, 91, 101
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 120, 329
Kzo9I	GATC	3 cut(s)	98, 148, 292
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	188
LweI	GCATC	2 cut(s)	101, 385
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	4, 409
MalI	GATC	3 cut(s)	100, 150, 294
MboI	GATC	3 cut(s)	98, 148, 292
MboII	GAAGA	3 cut(s)	33, 45, 265
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	9 cut(s)	61, 95, 120, 221, 322, 328, 352, 364, 381
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	3 cut(s)	102, 120, 191
MspR9I	CCNGG	2 cut(s)	204, 400
MvaI	CCWGG	2 cut(s)	204, 400
MwoI	GCNNNNNNNGC	3 cut(s)	111, 120, 329
NdeII	GATC	3 cut(s)	98, 148, 292
NlaIV	GGNNCC	2 cut(s)	14, 184
NmuCI	GTSAC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	405
PfoI	TCCNGGA	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	202, 398
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	2 cut(s)	202, 398
PspN4I	GGNNCC	2 cut(s)	14, 184
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	405
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	46
Sau3AI	GATC	3 cut(s)	98, 148, 292
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	204, 400
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	101, 385
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	318, 332, 346
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	202, 398
TaqI	TCGA	1 cut(s)	97
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	310
TatI	WGTACW	1 cut(s)	174
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	3 cut(s)	206, 341, 383
TspRI	CASTG	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	310
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.