Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0020046

Physical Location & Seq

Genomic Coordinates Reverse (-)

14914 .. 15528

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggccacgaccaccacatctcctccaccttctgaatccatacccaccaaactcaaccccaattctaatctcaaccccatccccaccaccaatcacccttggtccacgacccaaaatctgcacccatttttgcagtccctccttgggtccttccactgcaacgagtatttggaatgggttgttccttactacaccggcggtgaccttaacgtcatctgctatagcccaatcgatcgggttttttccctgatccaattcaaaactgatagagaactgcaacgtctcgctaccactcgccctaattcaaaccctccactcttcctccacttctctggcaatcgaggtcagctcaatctctcgcgcctatacataaatcttgatgttgatgtggaaagaaggggagaaagaagaaggtgggggagagtcgaaggtgtggtagaagaggttgaggtggagagagcagccgccaaagaagaagcgagactaggtcaagaagaagaaggcgaagtcagtgtggtagagacaggtggtgaggttgggggtagaggcattgacggcgatggtggtggtggttatgagcagaatggcttgggatttaagaggcaaaatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

204

Amino Acids

22.75

Weight (kDa)

5.19

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020046)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035228
rosa_multiflora	Rmu_sc0002539.1_g000004 Rmu_sc0009526.1_g000011 Rmu_sc0010190.1_g000018 Rmu_sc0015096.1_g000001 Rmu_sc0029445.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	198, 465
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	259, 306
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	287, 475, 515
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	102, 147
AsuHPI	GGTGA	3 cut(s)	86, 212, 542
AvaII	GGWCC	2 cut(s)	102, 147
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	2 cut(s)	86, 554
BceAI	ACGGC	1 cut(s)	571
BcoDI	GTCTC	3 cut(s)	287, 475, 515
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	220
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
Bme18I	GGWCC	2 cut(s)	102, 147
BmgT120I	GGNCC	2 cut(s)	102, 147
BmiI	GGNNCC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	98, 142
BsaXI	ACNNNNNCTCC	5 cut(s)	7, 34, 37, 306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	98, 142
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	3 cut(s)	287, 475, 515
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	232, 249
BspACI	CCGC	2 cut(s)	198, 465
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	98, 142
BssMI	GATC	2 cut(s)	232, 249
BssT1I	CCWWGG	2 cut(s)	98, 142
Bst6I	CTCTTC	2 cut(s)	323, 435
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	235, 252
BstMAI	GTCTC	3 cut(s)	287, 475, 515
BstMBI	GATC	2 cut(s)	232, 249
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstPI	GGTNACC	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	154, 517
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	102, 147
ClaI	ATCGAT	1 cut(s)	231
CviJI	RGCY	5 cut(s)	5, 225, 349, 464, 588
CviKI_1	RGCY	5 cut(s)	5, 225, 349, 464, 588
DpnI	GATC	2 cut(s)	234, 251
DpnII	GATC	2 cut(s)	232, 249
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	323, 435
EarI	CTCTTC	2 cut(s)	323, 435
Eco130I	CCWWGG	2 cut(s)	98, 142
Eco47I	GGWCC	2 cut(s)	102, 147
Eco91I	GGTNACC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	147
EcoO65I	GGTNACC	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	98, 142
ErhI	CCWWGG	2 cut(s)	98, 142
Esp3I	CGTCTC	1 cut(s)	287
FaiI	YATR	5 cut(s)	41, 222, 367, 371, 576
FaqI	GGGAC	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	462, 465
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	462, 465
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	363
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	35, 423
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	86, 212, 542
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	377, 491
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	6 cut(s)	39, 160, 390, 405, 422, 494
HpyCH4IV	ACGT	2 cut(s)	210, 280
HpyCH4V	TGCA	4 cut(s)	121, 133, 159, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpySE526I	ACGT	2 cut(s)	210, 280
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	232, 249
LpnPI	CCDG	4 cut(s)	208, 260, 318, 510
Lsp1109I	GCAGC	1 cut(s)	473
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	210, 280
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	234, 251
MboI	GATC	2 cut(s)	232, 249
MboII	GAAGA	6 cut(s)	310, 420, 452, 485, 506, 509
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	61, 254, 301
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	432
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	207, 597
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeII	GATC	2 cut(s)	232, 249
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	463, 466
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	102, 147
PspPPI	RGGWCCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	486
PvuI	CGATCG	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	207, 597
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	2 cut(s)	232, 249
Sau96I	GGNCC	2 cut(s)	102, 147
SchI	GAGTC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	220
SgrAI	CRCCGGYG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	102, 147
Sse9I	AATT	3 cut(s)	61, 254, 301
SsiI	CCGC	2 cut(s)	198, 465
SspMI	CTAG	1 cut(s)	485
StyI	CCWWGG	2 cut(s)	98, 142
TaiI	ACGT	2 cut(s)	213, 283
TaqI	TCGA	3 cut(s)	231, 340, 426
TasI	AATT	3 cut(s)	61, 254, 301
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	207, 597
Tru9I	TTAA	2 cut(s)	207, 597
TscAI	CASTG	2 cut(s)	161, 517
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	2 cut(s)	161, 517
Tth111I	GACNNNGTC	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	102, 147
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.