Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009526.1

Orthogroup ID

OG0020046

Physical Location & Seq

Genomic Coordinates Forward (+)

43766 .. 45194

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009526.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgggggaccttggagggcttgagggtgcgcaacaaatgtgcagggcggcgcttgcaggtgctgttagaggccacgaccaccacatctcctccaccttccaaatccacacccaccaaactcaaccccatcctcacgaccaatcactgttggtccacgacccaaactctgtcaccagttttgttgtccctcctcgggtccttcgactgcgacgagtgttccttattacaccggtggcgacctcaacttcctccgctactgcccaattgatcggacttgatgttaaggtggaaagaaggagaggaagaagaaggtgggggagagtagaaggcgtggtagtagaggtggaggtggagagagcagccgccgaggaagaagcgagactaaatcaagaagaaaagggtgaagtcggtgtggtagggacaggtggtgaggttggggtagaggcgtcgacagcggtggtggtgattatgagcagaagcgcttgggatttaagagacaaaaccaacgaagtgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

6.71

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020046)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035228
rosa_multiflora	Rmu_sc0002539.1_g000004 Rmu_sc0009526.1_g000011 Rmu_sc0010190.1_g000018 Rmu_sc0015096.1_g000001 Rmu_sc0029445.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc16I	TGCGCA	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	449
AciI	CCGC	4 cut(s)	47, 252, 363, 455
AcyI	GRCGYC	1 cut(s)	446
AfeI	AGCGCT	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgeI	ACCGGT	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	373, 489
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	192
Aor51HI	AGCGCT	1 cut(s)	481
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	359
AsiGI	ACCGGT	1 cut(s)	229
AspLEI	GCGC	3 cut(s)	31, 52, 482
AspS9I	GGNCC	3 cut(s)	7, 151, 196
AsuHPI	GGTGA	4 cut(s)	163, 413, 440, 475
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	3 cut(s)	7, 151, 196
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	373, 489
BfoI	RGCGCY	2 cut(s)	53, 483
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	48, 360, 363
BlsI	GCNGC	3 cut(s)	49, 361, 364
Bme18I	GGWCC	3 cut(s)	7, 151, 196
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	7, 151, 196
BmiI	GGNNCC	2 cut(s)	8, 197
BpuEI	CTTGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	10, 191, 366
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 74, 101, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	10, 191, 366
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	79, 180
BseXI	GCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	72
BshTI	ACCGGT	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	3 cut(s)	20, 170, 433
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	373, 489
BsmFI	GGGAC	3 cut(s)	20, 170, 433
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	4 cut(s)	47, 252, 363, 455
BspANI	GGCC	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	8, 197
BspMI	ACCTGC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	10, 191, 366
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	127
BstH2I	RGCGCY	2 cut(s)	53, 483
BstHHI	GCGC	3 cut(s)	31, 52, 482
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	2 cut(s)	373, 489
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 452
BstV1I	GCAGC	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	3 cut(s)	31, 52, 482
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	7, 151, 196
CseI	GACGC	1 cut(s)	435
CspAI	ACCGGT	1 cut(s)	229
CviJI	RGCY	3 cut(s)	19, 72, 362
CviKI_1	RGCY	3 cut(s)	19, 72, 362
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	10
Eco47I	GGWCC	3 cut(s)	7, 151, 196
Eco47III	AGCGCT	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	192
EcoO109I	RGGNCCY	2 cut(s)	7, 196
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaiI	YATR	1 cut(s)	470
FaqI	GGGAC	3 cut(s)	20, 170, 433
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	3 cut(s)	48, 360, 363
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	48, 360, 363
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	3 cut(s)	30, 51, 481
GluI	GCNGC	3 cut(s)	48, 360, 363
HaeII	RGCGCY	2 cut(s)	53, 483
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	3 cut(s)	31, 52, 482
Hin1I	GRCGYC	1 cut(s)	446
Hin6I	GCGC	3 cut(s)	29, 50, 480
HinP1I	GCGC	3 cut(s)	29, 50, 480
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	4 cut(s)	163, 413, 440, 475
Hpy166II	GTNNAC	2 cut(s)	154, 450
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	134, 389
Hpy8I	GTNNAC	2 cut(s)	154, 450
Hpy99I	CGWCG	2 cut(s)	213, 451
HpyAV	CCTTC	5 cut(s)	106, 209, 288, 303, 320
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	42, 56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 452
Hsp92I	GRCGYC	1 cut(s)	446
HspAI	GCGC	3 cut(s)	29, 50, 480
Kzo9I	GATC	1 cut(s)	267
LpnPI	CCDG	5 cut(s)	28, 42, 187, 243, 408
Lsp1109I	GCAGC	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	4 cut(s)	315, 318, 383, 404
MfeI	CAATTG	1 cut(s)	263
MluCI	AATT	1 cut(s)	263
MseI	TTAA	2 cut(s)	282, 491
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	53, 452
NdeII	GATC	1 cut(s)	267
NlaIV	GGNNCC	2 cut(s)	8, 197
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	169
NsbI	TGCGCA	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	2 cut(s)	199, 208
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	49, 361, 364
PpuMI	RGGWCCY	2 cut(s)	7, 196
Psp5II	RGGWCCY	2 cut(s)	7, 196
PspN4I	GGNNCC	2 cut(s)	8, 197
PspPI	GGNCC	3 cut(s)	7, 151, 196
PspPPI	RGGWCCY	2 cut(s)	7, 196
PstNI	CAGNNNCTG	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	282, 491
SatI	GCNGC	3 cut(s)	48, 360, 363
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	3 cut(s)	7, 151, 196
SgrAI	CRCCGGYG	1 cut(s)	229
SinI	GGWCC	3 cut(s)	7, 151, 196
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	4 cut(s)	47, 252, 363, 455
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	202, 449
TasI	AATT	1 cut(s)	263
TauI	GCSGC	2 cut(s)	50, 365
Tru1I	TTAA	2 cut(s)	282, 491
Tru9I	TTAA	2 cut(s)	282, 491
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	169
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	3 cut(s)	7, 151, 196
XmiI	GTMKAC	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.