Rroxscaffold_1G00022010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020046
Physical Location & Seq
Forward (+)
27107014 .. 27109249
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022010.1

Sequence Viewer

Length: 681 bp
ATGTTATCGGAAATTAAATTAAAATTTCGGGGTATTACGGAAAGAAGGGGAGGAAGAAGAAAGTGGGGGAGAGTCGAAGGCGTGGTAAAAGAGGTTGAGTTGGAAAGAGCAGCTATCGAGGAAGGAGCGAGACTAGGTCAAGAAGAAGAGGGTGAAGTTGGAGTGGTAAAGACAGGTGATGAGGTTGGGGCTGGAGGCGTCAATGGTGGTGGTAGTGGTTATGAGCAAAAGGGCTTGGGATTTAAGAGGCAAAATCAACGAAGGAAGACTCTGAAACCAACTCAGAAACCAATTTTGCTCGAAAATTGTAGACGAACCAAAAACCCAACTTTTGATGTAGAAACCTCTCGGATCCCAAATATGGGCCCAAGAGTTTGTGGACCTATAGTCATGGCCCAAACTAAGGCACCAAGTTCCATACCACATGCGCCTAGGGTTGGCTCAGTTACAATAACCAAGCTTTTGGGAGACAATACCGCTACCGAACCGAAACTCATGGGTATTGAGATTTTTGCAACCGTTGCCGATACCGATAAATCGGTACACCAATGTTGTTGCTCGGTTTTGGGTTTGTTGATCGAAAATTTTTGCAACGACGACAACAAGCAAGAACGGTGGCCTTTCTCTTCTAGATCTATAAATTTAGTTGTAGATTTGACTTTTAATAAATCTAGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.91

Weight (kDa)

9.41

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 310
AciI CCGC 2 cut(s) 477, 676
AclWI GGATC 2 cut(s) 346, 359
AcsI RAATTY 3 cut(s) 23, 583, 640
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 4 cut(s) 361, 362, 403, 437
AhdI GACNNNNNGTC 1 cut(s) 386
AluBI AGCT 2 cut(s) 113, 460
AluI AGCT 2 cut(s) 113, 460
Alw26I GTCTC 2 cut(s) 124, 462
AlwI GGATC 2 cut(s) 346, 359
AoxI GGCC 3 cut(s) 364, 393, 617
ApaI GGGCCC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 3 cut(s) 23, 583, 640
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 4 cut(s) 364, 365, 380, 394
AsuHPI GGTGA 2 cut(s) 164, 188
AvaII GGWCC 1 cut(s) 380
AvrII CCTAGG 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 368
BamHI GGATCC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 124, 462
BfaI CTAG 4 cut(s) 134, 432, 630, 672
BfmI CTRYAG 1 cut(s) 384
BglII AGATCT 1 cut(s) 632
BisI GCNGC 1 cut(s) 111
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 380
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 4 cut(s) 364, 365, 380, 394
BmiI GGNNCC 3 cut(s) 353, 366, 408
BpiI GAAGAC 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 362, 403, 437
BseDI CCNNGG 1 cut(s) 431
BseLI CCNNNNNNNGG 4 cut(s) 361, 362, 403, 437
BseMII CTCAG 2 cut(s) 296, 456
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 3 cut(s) 366, 395, 619
BshNI GGYRCC 1 cut(s) 406
BslI CCNNNNNNNGG 4 cut(s) 361, 362, 403, 437
BsmAI GTCTC 2 cut(s) 124, 462
BsnI GGCC 3 cut(s) 366, 395, 619
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 3 cut(s) 351, 576, 632
BspACI CCGC 2 cut(s) 477, 676
BspANI GGCC 3 cut(s) 366, 395, 619
BspCNI CTCAG 2 cut(s) 295, 455
BspLI GGNNCC 3 cut(s) 353, 366, 408
BspPI GGATC 2 cut(s) 346, 359
BspT107I GGYRCC 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 3 cut(s) 351, 576, 632
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 520, 615
Bst6I CTCTTC 2 cut(s) 141, 631
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 521
BstDEI CTNAG 3 cut(s) 282, 402, 442
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 3 cut(s) 354, 579, 635
BstMAI GTCTC 2 cut(s) 124, 462
BstMBI GATC 3 cut(s) 351, 576, 632
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 428
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 2 cut(s) 351, 632
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 2 cut(s) 351, 632
BsuRI GGCC 3 cut(s) 366, 395, 619
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 4 cut(s) 364, 365, 380, 394
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 542
CspCI CAANNNNNGTGG 4 cut(s) 190, 225, 596, 631
CviAII CATG 3 cut(s) 391, 425, 496
CviJI RGCY 8 cut(s) 113, 191, 234, 366, 395, 441, 460, 619
CviKI_1 RGCY 8 cut(s) 113, 191, 234, 366, 395, 441, 460, 619
CviQI GTAC 1 cut(s) 542
DdeI CTNAG 3 cut(s) 282, 402, 442
DpnI GATC 3 cut(s) 353, 578, 634
DpnII GATC 3 cut(s) 351, 576, 632
DriI GACNNNNNGTC 1 cut(s) 386
Eam1104I CTCTTC 2 cut(s) 141, 631
Eam1105I GACNNNNNGTC 1 cut(s) 386
EarI CTCTTC 2 cut(s) 141, 631
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 3 cut(s) 394, 428, 499
FaiI YATR 8 cut(s) 222, 362, 386, 392, 419, 426, 497, 638
FatI CATG 3 cut(s) 390, 424, 495
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 4 cut(s) 134, 432, 630, 672
GlaI GCGC 1 cut(s) 429
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 366, 395, 619
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 430
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 394, 428, 499
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 72, 268
HphI GGTGA 2 cut(s) 164, 188
Hpy166II GTNNAC 3 cut(s) 311, 380, 544
Hpy188I TCNGA 4 cut(s) 10, 273, 285, 351
Hpy188III TCNNGA 2 cut(s) 140, 630
Hpy8I GTNNAC 3 cut(s) 311, 380, 544
Hpy99I CGWCG 1 cut(s) 599
HpyAV CCTTC 4 cut(s) 39, 71, 116, 255
HpyCH4III ACNGT 2 cut(s) 520, 615
HpyCH4V TGCA 2 cut(s) 515, 591
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 3 cut(s) 282, 402, 442
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 394, 428, 499
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 3 cut(s) 351, 576, 632
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 2 cut(s) 159, 177
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 4 cut(s) 134, 432, 630, 672
MaeIII GTNAC 1 cut(s) 445
MalI GATC 3 cut(s) 353, 578, 634
MboI GATC 3 cut(s) 351, 576, 632
MboII GAAGA 6 cut(s) 66, 69, 155, 158, 277, 618
MflI RGATCY 2 cut(s) 351, 632
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 7 cut(s) 12, 17, 23, 291, 304, 583, 640
MlyI GAGTC 2 cut(s) 81, 262
MmeI TCCRAC 2 cut(s) 81, 139
MnlI CCTC 8 cut(s) 44, 85, 112, 142, 175, 188, 240, 355
MseI TTAA 4 cut(s) 15, 20, 243, 663
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeII GATC 3 cut(s) 351, 576, 632
NlaIII CATG 3 cut(s) 394, 428, 499
NlaIV GGNNCC 3 cut(s) 353, 366, 408
NspI RCATGY 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 80, 262
PpsI GAGTC 2 cut(s) 80, 262
PspN4I GGNNCC 3 cut(s) 353, 366, 408
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 4 cut(s) 364, 365, 380, 394
PsuI RGATCY 2 cut(s) 351, 632
PsyI GACNNNGTC 1 cut(s) 135
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
SaqAI TTAA 4 cut(s) 15, 20, 243, 663
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 351, 576, 632
Sau96I GGNCC 4 cut(s) 364, 365, 380, 394
SchI GAGTC 2 cut(s) 81, 262
SduI GDGCHC 1 cut(s) 368
SetI ASST 8 cut(s) 96, 115, 139, 178, 186, 347, 385, 462
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 380
Sse9I AATT 7 cut(s) 12, 17, 23, 291, 304, 583, 640
SsiI CCGC 2 cut(s) 477, 676
SspMI CTAG 4 cut(s) 134, 432, 630, 672
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 2 cut(s) 520, 615
TaqI TCGA 4 cut(s) 75, 117, 300, 579
TasI AATT 7 cut(s) 12, 17, 23, 291, 304, 583, 640
Tru1I TTAA 4 cut(s) 15, 20, 243, 663
Tru9I TTAA 4 cut(s) 15, 20, 243, 663
TseI GCWGC 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 3 cut(s) 23, 583, 640
XbaI TCTAGA 1 cut(s) 629
XceI RCATGY 1 cut(s) 428
XmaJI CCTAGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 4 cut(s) 134, 432, 630, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.