Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002627.1

Orthogroup ID

OG0021496

Physical Location & Seq

Genomic Coordinates Forward (+)

21156 .. 21593

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002627.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgaagagtttgcagctgcaacagaaaactttcagacccaaactggcagtggaggatttggtacagtatataagatactatatcagacaatgctatagtggcagtgaagaagatcacaagtttgggagaccgagggaagatgaaattttgcaccaagacagagcaacagtcagaagcgtccaccattgcaatctggctaagttgagaggtttctgcatccatgggaaacaatgctttctgcttcatgagtatatgaatagaggttcgctggagaagatcgatcctttttggttattagaatggccgaagaggtatgaaataacagttggaatggcaagcggacttacttacttgcgcaagggttgtaaacgtaagatcatccactgtgacatcaagctgggaaacattcttttacatgatgattgcaagtcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

145

Amino Acids

17.25

Weight (kDa)

9.3

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021496)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001741
rosa_multiflora	Rmu_sc0002627.1_g000004 Rmu_sc0003542.1_g000013 Rmu_sc0005603.1_g000004 Rmu_sc0019766.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	356
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	16, 397
AluI	AGCT	2 cut(s)	16, 397
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	13, 16
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	3, 25
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	2 cut(s)	14, 17
BlsI	GCNGC	2 cut(s)	15, 18
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	131, 220
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	131, 220
BseGI	GGATG	2 cut(s)	216, 378
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	3, 25
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	112, 276, 280, 375
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	244
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	131, 220
BssMI	GATC	4 cut(s)	112, 276, 280, 375
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	66, 169, 325, 386
Bst6I	CTCTTC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	216, 378
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	4 cut(s)	115, 279, 283, 378
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	4 cut(s)	112, 276, 280, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	3, 25
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	216, 378
BtsI	GCAGTG	2 cut(s)	54, 109
BtsIMutI	CAGTG	3 cut(s)	54, 109, 382
Cac8I	GCNNGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	3 cut(s)	221, 245, 416
CviJI	RGCY	4 cut(s)	16, 197, 304, 397
CviKI_1	RGCY	4 cut(s)	16, 197, 304, 397
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	114, 278, 282, 377
DpnII	GATC	4 cut(s)	112, 276, 280, 375
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	224, 248, 419
FatI	CATG	3 cut(s)	220, 244, 415
Fnu4HI	GCNGC	2 cut(s)	14, 17
FokI	GGATG	2 cut(s)	203, 365
Fsp4HI	GCNGC	2 cut(s)	14, 17
FspI	TGCGCA	1 cut(s)	356
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	14, 17
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	304
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	224, 248, 419
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	181, 368
Hpy188I	TCNGA	3 cut(s)	35, 86, 173
Hpy188III	TCNNGA	2 cut(s)	245, 432
Hpy8I	GTNNAC	2 cut(s)	181, 368
HpyCH4III	ACNGT	4 cut(s)	66, 169, 325, 386
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	13, 19, 151, 189, 216, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	224, 248, 419
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	112, 276, 280, 375
LpnPI	CCDG	4 cut(s)	29, 179, 254, 383
Lsp1109I	GCAGC	2 cut(s)	3, 25
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	4 cut(s)	114, 278, 282, 377
MboI	GATC	4 cut(s)	112, 276, 280, 375
MboII	GAAGA	6 cut(s)	16, 119, 122, 149, 286, 319
MluCI	AATT	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	5 cut(s)	46, 126, 200, 254, 303
MroXI	GAANNNNTTC	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	112, 276, 280, 375
NlaIII	CATG	3 cut(s)	224, 248, 419
NmuCI	GTSAC	1 cut(s)	386
NsbI	TGCGCA	1 cut(s)	356
PagI	TCATGA	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	15, 18
PspFI	CCCAGC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	14, 17
Sau3AI	GATC	4 cut(s)	112, 276, 280, 375
SetI	ASST	6 cut(s)	18, 211, 265, 314, 373, 399
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	4 cut(s)	66, 169, 325, 386
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	279
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	144
TscAI	CASTG	3 cut(s)	54, 109, 389
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	13, 16
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	5 cut(s)	17, 156, 233, 269, 330
TspRI	CASTG	3 cut(s)	54, 109, 389
XapI	RAATTY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.