Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005603.1

Orthogroup ID

OG0021496

Physical Location & Seq

Genomic Coordinates Forward (+)

20118 .. 21517

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005603.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaaagtccatgcattttcacaatccagggaaacagaagctttcaagaactcaaatatgccgctgtcctatatggagatgaacaagactgctttgcatttagttggggatgatggtttgcaggttgtttttcaacttctctcgcagagctggagattatctctattctgggtttgcccaggagattcaataatgaagagtttgcagctgcaacagaaaactttcagacccaaactggcagtggaggatttggtacagtatataagatactatatcagacaatgctatagtggcagtgaagaagatcacaagtttgggagaccgagggaagatgaaattttgcaccaagacagagcaacagtcagaagcgtccaccattgcaatctggctaagttgagaggtttctgcatccatgggaaacaatgctttctgcttcatgagtatatgaatagaggttcgctggagaagatcgatcctttttggttattagaatggccgaagaggtatgaaataacagttggaatggcaagcggacttacttacttgcgcaagggttgtaaacgtaagatcatccaccgtgacatcaagctggggaacattcttttacatgatgattgcaagtcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

209

Amino Acids

24.61

Weight (kDa)

9.24

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021496)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001741
rosa_multiflora	Rmu_sc0002627.1_g000004 Rmu_sc0003542.1_g000013 Rmu_sc0005603.1_g000004 Rmu_sc0019766.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	112
AciI	CCGC	2 cut(s)	62, 531
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	336
AfaI	GTAC	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	46, 134, 189
AjnI	CCWGG	2 cut(s)	26, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	4 cut(s)	41, 150, 208, 589
AluI	AGCT	4 cut(s)	41, 150, 208, 589
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	205, 208
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	195, 217
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	28, 180
BcoDI	GTCTC	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	62, 206, 209
BlsI	GCNGC	3 cut(s)	63, 207, 210
Bme1390I	CCNGG	2 cut(s)	28, 180
BmrFI	CCNGG	2 cut(s)	28, 180
BmsI	GCATC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	2 cut(s)	172, 482
Bsa29I	ATCGAT	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	27, 178, 323, 412
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	28, 180
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	27, 178, 323, 412
BseGI	GGATG	3 cut(s)	115, 408, 570
BseMI	GCAATG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	195, 217
BseYI	CCCAGC	1 cut(s)	589
BshFI	GGCC	1 cut(s)	496
BshVI	ATCGAT	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	496
Bso31I	GGTCTC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	304, 468, 472, 567
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	2 cut(s)	62, 531
BspANI	GGCC	1 cut(s)	496
BspDI	ATCGAT	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	4 cut(s)	27, 178, 323, 412
BssMI	GATC	4 cut(s)	304, 468, 472, 567
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	28, 180
Bst4CI	ACNGT	4 cut(s)	258, 361, 517, 578
Bst6I	CTCTTC	2 cut(s)	191, 494
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	3 cut(s)	115, 408, 570
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	4 cut(s)	307, 471, 475, 570
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	4 cut(s)	304, 468, 472, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	2 cut(s)	28, 180
BstSCI	CCNGG	2 cut(s)	26, 178
BstSFI	CTRYAG	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	195, 217
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	496
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	3 cut(s)	115, 408, 570
BtsI	GCAGTG	2 cut(s)	246, 301
BtsIMutI	CAGTG	2 cut(s)	246, 301
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	529
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	4 cut(s)	11, 413, 437, 608
CviJI	RGCY	6 cut(s)	41, 150, 208, 389, 496, 589
CviKI_1	RGCY	6 cut(s)	41, 150, 208, 389, 496, 589
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	4 cut(s)	306, 470, 474, 569
DpnII	GATC	4 cut(s)	304, 468, 472, 567
EaeI	YGGCCR	1 cut(s)	494
Eam1104I	CTCTTC	2 cut(s)	191, 494
EarI	CTCTTC	2 cut(s)	191, 494
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	26, 178
EcoT14I	CCWWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	14, 416, 440, 611
FatI	CATG	4 cut(s)	10, 412, 436, 607
Fnu4HI	GCNGC	3 cut(s)	62, 206, 209
FokI	GGATG	3 cut(s)	122, 395, 557
Fsp4HI	GCNGC	3 cut(s)	62, 206, 209
FspI	TGCGCA	1 cut(s)	548
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	3 cut(s)	62, 206, 209
GsaI	CCCAGC	1 cut(s)	593
GsuI	CTGGAG	2 cut(s)	172, 482
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	4 cut(s)	14, 416, 440, 611
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	373, 560
Hpy188I	TCNGA	3 cut(s)	227, 278, 365
Hpy188III	TCNNGA	3 cut(s)	46, 437, 624
Hpy8I	GTNNAC	2 cut(s)	373, 560
HpyCH4III	ACNGT	4 cut(s)	258, 361, 517, 578
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	9 cut(s)	14, 97, 121, 205, 211, 343, 381, 408, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	4 cut(s)	14, 416, 440, 611
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	304, 468, 472, 567
Lsp1109I	GCAGC	2 cut(s)	195, 217
LweI	GCATC	1 cut(s)	417
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	4 cut(s)	306, 470, 474, 569
MboI	GATC	4 cut(s)	304, 468, 472, 567
MboII	GAAGA	6 cut(s)	208, 311, 314, 341, 478, 511
MluCI	AATT	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	5 cut(s)	238, 318, 392, 446, 495
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	221
MspA1I	CMGCKG	2 cut(s)	64, 208
MspR9I	CCNGG	2 cut(s)	28, 180
MvaI	CCWGG	2 cut(s)	28, 180
MwoI	GCNNNNNNNGC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	304, 468, 472, 567
NlaIII	CATG	4 cut(s)	14, 416, 440, 611
NmuCI	GTSAC	1 cut(s)	578
NsbI	TGCGCA	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	16
PagI	TCATGA	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	63, 207, 210
Psp6I	CCWGG	2 cut(s)	26, 178
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	2 cut(s)	26, 178
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	62, 206, 209
Sau3AI	GATC	4 cut(s)	304, 468, 472, 567
ScrFI	CCNGG	2 cut(s)	28, 180
SetI	ASST	9 cut(s)	43, 126, 152, 210, 403, 457, 506, 565, 591
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	62, 531
StyD4I	CCNGG	2 cut(s)	26, 178
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	4 cut(s)	258, 361, 517, 578
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	1 cut(s)	471
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	1 cut(s)	336
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	2 cut(s)	246, 301
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	205, 208
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	7 cut(s)	17, 95, 209, 348, 425, 461, 522
TspRI	CASTG	2 cut(s)	246, 301
XapI	RAATTY	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.