Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003542.1

Orthogroup ID

OG0021496

Physical Location & Seq

Genomic Coordinates Reverse (-)

48496 .. 48933

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003542.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgaagagtttgcagctgcaacagaaaactttcagacccaaactggcagtggaggatttggtacagtatataagatactatatcagacaatgctatagtggcagtgaagaagatcacaagtttgggagaccgagggaagatgaaattttgcaccaagacagagcaacagtcagaagcgtccaccattgcaatctggctaagttgagaggtttctgcatccatgggaaacaatgctttctgcttcatgagtatatgaatagaggttcgctggagaagatcgatcctttttggttattagaatggccgaagaggtatgaaataacagttggaatggcaagaggacttgcttacttgcgcaagggttgtaaacgtaagatcatccactgtgacatcaagctgggaaacattcttttacatgatgattgcaagtcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

145

Amino Acids

17.29

Weight (kDa)

9.4

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021496)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001741
rosa_multiflora	Rmu_sc0002627.1_g000004 Rmu_sc0003542.1_g000013 Rmu_sc0005603.1_g000004 Rmu_sc0019766.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	356
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	16, 397
AluI	AGCT	2 cut(s)	16, 397
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	13, 16
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	3, 25
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	2 cut(s)	14, 17
BlsI	GCNGC	2 cut(s)	15, 18
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	131, 220
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	131, 220
BseGI	GGATG	2 cut(s)	216, 378
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	3, 25
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	112, 276, 280, 375
Bsp19I	CCATGG	1 cut(s)	220
BspANI	GGCC	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	244
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	131, 220
BssMI	GATC	4 cut(s)	112, 276, 280, 375
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	66, 169, 325, 386
Bst6I	CTCTTC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	216, 378
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	4 cut(s)	115, 279, 283, 378
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	4 cut(s)	112, 276, 280, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	3, 25
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	216, 378
BtsI	GCAGTG	2 cut(s)	54, 109
BtsIMutI	CAGTG	3 cut(s)	54, 109, 382
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	3 cut(s)	221, 245, 416
CviJI	RGCY	4 cut(s)	16, 197, 304, 397
CviKI_1	RGCY	4 cut(s)	16, 197, 304, 397
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	114, 278, 282, 377
DpnII	GATC	4 cut(s)	112, 276, 280, 375
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	224, 248, 419
FatI	CATG	3 cut(s)	220, 244, 415
Fnu4HI	GCNGC	2 cut(s)	14, 17
FokI	GGATG	2 cut(s)	203, 365
Fsp4HI	GCNGC	2 cut(s)	14, 17
FspI	TGCGCA	1 cut(s)	356
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	14, 17
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	304
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	224, 248, 419
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	181, 368
Hpy188I	TCNGA	3 cut(s)	35, 86, 173
Hpy188III	TCNNGA	2 cut(s)	245, 432
Hpy8I	GTNNAC	2 cut(s)	181, 368
HpyCH4III	ACNGT	4 cut(s)	66, 169, 325, 386
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	13, 19, 151, 189, 216, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	224, 248, 419
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	112, 276, 280, 375
LpnPI	CCDG	4 cut(s)	29, 179, 254, 383
Lsp1109I	GCAGC	2 cut(s)	3, 25
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	4 cut(s)	114, 278, 282, 377
MboI	GATC	4 cut(s)	112, 276, 280, 375
MboII	GAAGA	6 cut(s)	16, 119, 122, 149, 286, 319
MluCI	AATT	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	46, 126, 200, 254, 303, 332
MroXI	GAANNNNTTC	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	112, 276, 280, 375
NlaIII	CATG	3 cut(s)	224, 248, 419
NmuCI	GTSAC	1 cut(s)	386
NsbI	TGCGCA	1 cut(s)	356
PagI	TCATGA	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	15, 18
PspFI	CCCAGC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	14, 17
Sau3AI	GATC	4 cut(s)	112, 276, 280, 375
SetI	ASST	6 cut(s)	18, 211, 265, 314, 373, 399
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	4 cut(s)	66, 169, 325, 386
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	279
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	144
TscAI	CASTG	3 cut(s)	54, 109, 389
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	13, 16
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	5 cut(s)	17, 156, 233, 269, 330
TspRI	CASTG	3 cut(s)	54, 109, 389
XapI	RAATTY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.