Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019766.1

Orthogroup ID

OG0021496

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1782

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

gttcgggttttggggtcgcatcaaatcaagtttcgtcccatgaaagtccttgcatgttcacaatccagggaaacagaagctttcaagaactcaaatatgccgctgtcctatatggagatgaacaagactgctttgcatttagttggggatgatggtttgcagcagagctggagattatctctattctgggtttgcccaggagattcaataatgaagagtttgcagctgcaacagaaaactttcagacccaaactggcagtggaggatttggtacagtatataagatactatatcagacaatgctatagtggcagtgaagaagatcacaagtttgggagaccgagggaagatgaaattttgcaccaagacagagcaacagtcagaagcgtccaccattgcaatctggctaagttgagaggtttctgcatccatgggaaacaatgctttctgcttcatgagtatatgaatagaggttcgctggagaagatcgatcctttttggttattagaatggccgaagaggtatgaaataacagttggaatggcaagcggacttacttacttgcgcaagggttgtaaacgtaagatcatccaccgtgacatcaagctggggaacattcttttacatgatgattgcaagtcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

215

Amino Acids

25.27

Weight (kDa)

9.42

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021496)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001741
rosa_multiflora	Rmu_sc0002627.1_g000004 Rmu_sc0003542.1_g000013 Rmu_sc0005603.1_g000004 Rmu_sc0019766.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	566
AciI	CCGC	2 cut(s)	101, 549
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	85, 207
AjnI	CCWGG	2 cut(s)	65, 196
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	80, 168, 226, 607
AluI	AGCT	4 cut(s)	80, 168, 226, 607
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	3 cut(s)	160, 223, 226
ApoI	RAATTY	1 cut(s)	354
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	567
BbvI	GCAGC	3 cut(s)	172, 213, 235
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	67, 198
BcoDI	GTCTC	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	4 cut(s)	101, 161, 224, 227
BlsI	GCNGC	4 cut(s)	102, 162, 225, 228
Bme1390I	CCNGG	2 cut(s)	67, 198
BmrFI	CCNGG	2 cut(s)	67, 198
BmsI	GCATC	2 cut(s)	28, 435
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	2 cut(s)	190, 500
Bsa29I	ATCGAT	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	4 cut(s)	66, 196, 341, 430
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	67, 198
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	4 cut(s)	66, 196, 341, 430
BseGI	GGATG	3 cut(s)	154, 426, 588
BseMI	GCAATG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	172, 213, 235
BseYI	CCCAGC	1 cut(s)	607
BshFI	GGCC	1 cut(s)	514
BshVI	ATCGAT	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	514
Bso31I	GGTCTC	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	322, 486, 490, 585
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	2 cut(s)	101, 549
BspANI	GGCC	1 cut(s)	514
BspDI	ATCGAT	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	454
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	4 cut(s)	66, 196, 341, 430
BssMI	GATC	4 cut(s)	322, 486, 490, 585
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	67, 198
Bst4CI	ACNGT	4 cut(s)	276, 379, 535, 596
Bst6I	CTCTTC	2 cut(s)	209, 512
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	154, 426, 588
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	4 cut(s)	325, 489, 493, 588
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	4 cut(s)	322, 486, 490, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	2 cut(s)	67, 198
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	65, 196
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	172, 213, 235
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	514
BsuTUI	ATCGAT	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	154, 426, 588
BtsI	GCAGTG	2 cut(s)	264, 319
BtsIMutI	CAGTG	2 cut(s)	264, 319
Cac8I	GCNNGC	1 cut(s)	547
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	567
ClaI	ATCGAT	1 cut(s)	489
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	5 cut(s)	40, 54, 431, 455, 626
CviJI	RGCY	6 cut(s)	80, 168, 226, 407, 514, 607
CviKI_1	RGCY	6 cut(s)	80, 168, 226, 407, 514, 607
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	4 cut(s)	324, 488, 492, 587
DpnII	GATC	4 cut(s)	322, 486, 490, 585
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	209, 512
EarI	CTCTTC	2 cut(s)	209, 512
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	65, 196
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	5 cut(s)	43, 57, 434, 458, 629
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	5 cut(s)	39, 53, 430, 454, 625
Fnu4HI	GCNGC	4 cut(s)	101, 161, 224, 227
FokI	GGATG	3 cut(s)	161, 413, 575
Fsp4HI	GCNGC	4 cut(s)	101, 161, 224, 227
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	101, 161, 224, 227
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	2 cut(s)	190, 500
HaeIII	GGCC	1 cut(s)	514
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	5 cut(s)	43, 57, 434, 458, 629
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	59, 391, 578
Hpy188I	TCNGA	3 cut(s)	245, 296, 383
Hpy188III	TCNNGA	3 cut(s)	85, 455, 642
Hpy8I	GTNNAC	3 cut(s)	59, 391, 578
HpyCH4III	ACNGT	4 cut(s)	276, 379, 535, 596
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	9 cut(s)	53, 136, 160, 223, 229, 361, 399, 426, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	5 cut(s)	43, 57, 434, 458, 629
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	322, 486, 490, 585
Lsp1109I	GCAGC	3 cut(s)	172, 213, 235
LweI	GCATC	2 cut(s)	28, 435
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	324, 488, 492, 587
MboI	GATC	4 cut(s)	322, 486, 490, 585
MboII	GAAGA	6 cut(s)	226, 329, 332, 359, 496, 529
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	256, 336, 410, 464, 513
MroXI	GAANNNNTTC	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	103, 226
MspR9I	CCNGG	2 cut(s)	67, 198
MvaI	CCWGG	2 cut(s)	67, 198
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	4 cut(s)	322, 486, 490, 585
NlaIII	CATG	5 cut(s)	43, 57, 434, 458, 629
NmuCI	GTSAC	1 cut(s)	596
NsbI	TGCGCA	1 cut(s)	566
NspI	RCATGY	1 cut(s)	57
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	102, 162, 225, 228
Psp6I	CCWGG	2 cut(s)	65, 196
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	2 cut(s)	65, 196
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SatI	GCNGC	4 cut(s)	101, 161, 224, 227
Sau3AI	GATC	4 cut(s)	322, 486, 490, 585
ScrFI	CCNGG	2 cut(s)	67, 198
SetI	ASST	8 cut(s)	82, 170, 228, 421, 475, 524, 583, 609
SfaNI	GCATC	2 cut(s)	28, 435
SfcI	CTRYAG	1 cut(s)	304
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	101, 549
StyD4I	CCNGG	2 cut(s)	65, 196
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	276, 379, 535, 596
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	489
TaqII	GACCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	354
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	2 cut(s)	264, 319
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	3 cut(s)	160, 223, 226
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	7 cut(s)	56, 134, 227, 366, 443, 479, 540
TspRI	CASTG	2 cut(s)	264, 319
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.