Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0020602

Physical Location & Seq

Genomic Coordinates Forward (+)

104628 .. 110385

Gene Structure 5758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atggctcggctcttcagcctgcagaagcgtcgtcctaacccactggtagtcggagatgacgtctttgaagacctcaagaatcaggcgagagctcgccatcgccatccggtaagaaacggagccatcggcgatgtcctcgagagagcactctttgagcccaacccggagcacgtggccggtgatggaggaacgcagctgcgttacacaggaatacgaggactcaacgccctgactttcttacttcccatggccgtcatcattgtgcttcagtactcgaagaaaatcggagccatttcaaccgttcttctgctttcaacaactctcgccctcaccctccgcccgccgcagtcgcttctcgagtacgttgaggtgctctcggagctgcaaaataggttcaggggatgccactgtgcaaaaagtcaatgcagaagtcggcagtgcccctgctttgccgcagatcatgaatgtcacccagatgtgtgtcgcaattgttgggctaagctccccgctgtgttgaagctgtatcgtgaccaaattacggctgatatgaagaccgctgtgtttgcagagctgcttcccattcttgtttcccgacctctggaatctgattctacacatgcagagcgagttgcagatgccaacgagctgcttcccattcttgtttcccgacctctggaatctgattctacacatggagagcgagttgcagatgccaacgtgaaacaggctattgagtggattatgtgcaacctcggtggtcactattcagctgattcagttgctgctgcacttgctgttggtgctgactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

270

Amino Acids

29.73

Weight (kDa)

7.09

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
preSET_CXC	PF18264	134 - 166	5.9e-07	CXC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020602)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0240311
rosa_laevigata	RLG00000000686
rosa_multiflora	Rmu_sc0002676.1_g000014
rosa_samantha	Rh7AG489100 Rh7BG462000
rosa_wichuraiana	Rw7G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AciI	CCGC	6 cut(s)	337, 341, 344, 453, 507, 555
AcoI	YGGCCR	2 cut(s)	174, 249
AcuI	CTGAAG	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	272, 362
AfiI	CCNNNNNNNGG	3 cut(s)	538, 598, 673
AgsI	TTSAA	4 cut(s)	68, 297, 315, 517
AluBI	AGCT	8 cut(s)	92, 196, 382, 502, 520, 571, 646, 770
AluI	AGCT	8 cut(s)	92, 196, 382, 502, 520, 571, 646, 770
Alw21I	GWGCWC	4 cut(s)	94, 148, 171, 375
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	2 cut(s)	137, 356
AoxI	GGCC	2 cut(s)	174, 249
ApeKI	GCWGC	7 cut(s)	193, 196, 382, 571, 646, 782, 785
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	191, 322, 461
AvaI	CYCGRG	2 cut(s)	137, 356
BaeGI	GKGCMC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	94, 159
BbrPI	CACGTG	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	75, 557
Bbv12I	GWGCWC	4 cut(s)	94, 148, 171, 375
BbvI	GCAGC	7 cut(s)	183, 205, 369, 558, 633, 769, 772
BccI	CCATC	4 cut(s)	105, 111, 131, 176
BceAI	ACGGC	2 cut(s)	236, 555
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	9 cut(s)	194, 197, 344, 383, 453, 572, 647, 783, 786
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	9 cut(s)	195, 198, 345, 384, 454, 573, 648, 784, 787
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	2 cut(s)	137, 356
BmiI	GGNNCC	2 cut(s)	121, 289
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	392, 625, 700
BpiI	GAAGAC	2 cut(s)	75, 557
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	246, 751
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	538, 598, 673
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	246, 751
BseGI	GGATG	2 cut(s)	103, 407
BseLI	CCNNNNNNNGG	3 cut(s)	538, 598, 673
BseNI	ACTGG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	7 cut(s)	183, 205, 369, 558, 633, 769, 772
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	2 cut(s)	176, 251
BsiHKAI	GWGCWC	4 cut(s)	94, 148, 171, 375
BsiHKCI	CYCGRG	2 cut(s)	137, 356
BsiSI	CCGG	3 cut(s)	107, 164, 177
BslI	CCNNNNNNNGG	3 cut(s)	538, 598, 673
BsnI	GGCC	2 cut(s)	176, 251
BsoBI	CYCGRG	2 cut(s)	137, 356
Bsp1286I	GDGCHC	6 cut(s)	94, 148, 159, 171, 375, 443
Bsp143I	GATC	1 cut(s)	457
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	6 cut(s)	337, 341, 344, 453, 507, 555
BspANI	GGCC	2 cut(s)	176, 251
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	121, 289
BspMAI	CTGCAG	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	246, 751
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	301, 410
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	20, 94, 341
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	103, 407
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 379, 563, 791, 800
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	7 cut(s)	183, 205, 369, 558, 633, 769, 772
BstV2I	GAAGAC	2 cut(s)	75, 557
BsuRI	GGCC	2 cut(s)	176, 251
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	2 cut(s)	83, 144
BtsCI	GGATG	2 cut(s)	103, 407
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	3 cut(s)	41, 406, 443
Cac8I	GCNNGC	3 cut(s)	20, 94, 341
CaiI	CAGNNNCTG	1 cut(s)	782
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	176
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	271, 361
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	4 cut(s)	247, 461, 617, 692
CviQI	GTAC	2 cut(s)	271, 361
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	2 cut(s)	174, 249
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	94, 159
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	2 cut(s)	137, 356
EcoICRI	GAGCTC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	94, 159
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	250, 464, 620, 695
FaiI	YATR	6 cut(s)	248, 462, 548, 618, 693, 743
FatI	CATG	4 cut(s)	246, 460, 616, 691
FauI	CCCGC	2 cut(s)	348, 514
Fnu4HI	GCNGC	9 cut(s)	194, 197, 344, 383, 453, 572, 647, 783, 786
FokI	GGATG	2 cut(s)	90, 414
FriOI	GRGCYC	2 cut(s)	94, 159
Fsp4HI	GCNGC	9 cut(s)	194, 197, 344, 383, 453, 572, 647, 783, 786
GluI	GCNGC	9 cut(s)	194, 197, 344, 383, 453, 572, 647, 783, 786
HaeIII	GGCC	2 cut(s)	176, 251
HapII	CCGG	3 cut(s)	107, 164, 177
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	250, 464, 620, 695
HinfI	GANTC	7 cut(s)	79, 219, 602, 608, 677, 683, 773
HpaII	CCGG	3 cut(s)	107, 164, 177
HphI	GGTGA	3 cut(s)	191, 322, 461
Hpy188I	TCNGA	5 cut(s)	53, 287, 379, 607, 682
Hpy188III	TCNNGA	9 cut(s)	76, 139, 356, 461, 527, 591, 599, 666, 674
Hpy99I	CGWCG	1 cut(s)	33
HpyCH4III	ACNGT	2 cut(s)	301, 410
HpyCH4IV	ACGT	4 cut(s)	60, 171, 363, 717
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 379, 563, 791, 800
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	4 cut(s)	60, 171, 363, 717
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	250, 464, 620, 695
Kzo9I	GATC	1 cut(s)	457
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	5 cut(s)	119, 166, 287, 379, 507
Lsp1109I	GCAGC	7 cut(s)	183, 205, 369, 558, 633, 769, 772
LweI	GCATC	3 cut(s)	392, 625, 700
MaeII	ACGT	4 cut(s)	60, 171, 363, 717
MaeIII	GTNAC	4 cut(s)	200, 467, 527, 758
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	5 cut(s)	4, 80, 289, 296, 562
MfeI	CAATTG	1 cut(s)	487
MhlI	GDGCHC	6 cut(s)	94, 148, 159, 171, 375, 443
MluCI	AATT	2 cut(s)	487, 534
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	31
MslI	CAYNNNNRTG	2 cut(s)	260, 474
MspA1I	CMGCKG	4 cut(s)	196, 509, 557, 770
MspI	CCGG	3 cut(s)	107, 164, 177
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	487
MwoI	GCNNNNNNNGC	5 cut(s)	349, 379, 563, 791, 800
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	250, 464, 620, 695
NlaIV	GGNNCC	2 cut(s)	121, 289
NmuCI	GTSAC	3 cut(s)	467, 527, 758
NspI	RCATGY	1 cut(s)	620
PaeR7I	CTCGAG	2 cut(s)	137, 356
PagI	TCATGA	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	6 cut(s)	79, 602, 608, 677, 683, 773
PkrI	GCNGC	9 cut(s)	195, 198, 345, 384, 454, 573, 648, 784, 787
PleI	GAGTC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	94
PspCI	CACGTG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	121, 289
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	782
PvuII	CAGCTG	2 cut(s)	196, 770
RsaI	GTAC	2 cut(s)	272, 362
RsaNI	GTAC	2 cut(s)	271, 361
RseI	CAYNNNNRTG	2 cut(s)	260, 474
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	17
SatI	GCNGC	9 cut(s)	194, 197, 344, 383, 453, 572, 647, 783, 786
Sau3AI	GATC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	6 cut(s)	94, 148, 159, 171, 375, 443
SfaNI	GCATC	3 cut(s)	392, 625, 700
SfcI	CTRYAG	1 cut(s)	20
Sfr274I	CTCGAG	2 cut(s)	137, 356
SlaI	CTCGAG	2 cut(s)	137, 356
SmiMI	CAYNNNNRTG	2 cut(s)	260, 474
SmlI	CTYRAG	3 cut(s)	74, 137, 356
SmoI	CTYRAG	3 cut(s)	74, 137, 356
Sse9I	AATT	2 cut(s)	487, 534
SsiI	CCGC	6 cut(s)	337, 341, 344, 453, 507, 555
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	301, 410
TaiI	ACGT	4 cut(s)	63, 174, 366, 720
TaqI	TCGA	3 cut(s)	138, 275, 357
TasI	AATT	2 cut(s)	487, 534
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	346, 455
TfiI	GAWTC	6 cut(s)	79, 602, 608, 677, 683, 773
TscAI	CASTG	3 cut(s)	48, 413, 443
TseFI	GTSAC	3 cut(s)	467, 527, 758
TseI	GCWGC	7 cut(s)	193, 196, 382, 571, 646, 782, 785
Tsp45I	GTSAC	3 cut(s)	467, 527, 758
TspDTI	ATGAA	2 cut(s)	477, 563
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	3 cut(s)	48, 413, 443
XceI	RCATGY	1 cut(s)	620
XhoI	CTCGAG	2 cut(s)	137, 356
ZraI	GACGTC	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.