Rmu_sc0002773.1_g000009

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002773.1
OG0016063
Physical Location & Seq
Forward (+)
23820 .. 24890
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002773.1_g000009.1.cds

Sequence Viewer

Length: 1071 bp
atggaaacaagatctgccgctgccaagaagaaaaagctcttcttctgcaaagaaaatgaacacagccccgatcatcacaacaatattgaccgcatcaccgaactccccgacgccgttctccaccacatcctcttcctcctccccatcaaaaccgtcgcgcaaaccagcgtcttgtcaaaacggtggcgttcgctctggtcgtccttccccgacctcgacttcacaaccctaaacccatttccgaaaccatgttcctcatccaagtcacattctctgaattgcaaagagtccgactttatcactcaggtcctcaacaaccgagacaagcactccgatattcggattctccggttccgggcccggctgagcttttcacgtctcaacggtctgattcggctcgcaatcagacacaaggtgcaggtgctcgacgtggaggttttcacagaggattacttcaacttccctagatgtgtcatcgccagcgactcattaagggttttcaagttaaagtcccggagacccggtttccggttaccaccttcttctgtaatgacaagcggtttccgatctcttcagtctttatcgctttcccggatcagtctatgcaaccagccctctctctctgatatgttctccgagtcgtccttccttctgctcaagaagctgagcctcgacacgtgttttgggttgaagcatcttagggttgggtgccgtgcgctgcaagacttaaccctagagaactgtttcgagctgcaagggctggatgtttcgggttcgaaattggagaggttgcggatagcgaaatgttttgatgggtacattgagaagagttgggtgaagattgatgcgccgaggcttggagtggttttgtgggaacacaatgctcttagtgataatatctgtatagagaatctgagttacttgcataaggcctccattggtttgctccatgaagatattagtgttgcaaagcttcaaagtgtgtccaatcttttttcggctctctctcttgcacattgcttgacactcgaaagcaattgtattgaggtacttcaatcttttcttgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

356

Amino Acids

40.51

Weight (kDa)

9.13

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03220
fragaria_vesca FvH4_6g44010
malus_domestica MD09G1101500.v1.1 MD17G1089100.v1.1
prunus_persica Prupe.3G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160751
rosa_laevigata RLG00000021239
rosa_multiflora Rmu_sc0002773.1_g000009
rosa_roxburghii Rroxscaffold_2G00089400
rosa_rugosa Rorug02G0485700
rosa_samantha Rh2AG550700 Rh2BG565300 Rh2CG535100 Rh2DG574200
rosa_wichuraiana Rw2G045630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 708
AccII CGCG 1 cut(s) 158
AciI CCGC 4 cut(s) 18, 91, 558, 793
AclWI GGATC 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 557
AcvI CACGTG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 2 cut(s) 818, 1050
AfiI CCNNNNNNNGG 4 cut(s) 339, 355, 528, 857
AflIII ACRYGT 2 cut(s) 675, 677
AgsI TTSAA 5 cut(s) 457, 502, 691, 977, 1055
AjiI CACGTC 2 cut(s) 377, 430
AluBI AGCT 5 cut(s) 37, 369, 664, 751, 973
AluI AGCT 5 cut(s) 37, 369, 664, 751, 973
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 3 cut(s) 315, 383, 511
AlwI GGATC 1 cut(s) 602
AoxI GGCC 2 cut(s) 357, 930
ApaI GGGCCC 1 cut(s) 361
ApeKI GCWGC 3 cut(s) 20, 718, 751
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 3 cut(s) 160, 718, 850
AspS9I GGNCC 3 cut(s) 307, 357, 358
AsuC2I CCSGG 5 cut(s) 356, 361, 514, 522, 592
AsuHPI GGTGA 2 cut(s) 88, 847
AsuII TTCGAA 1 cut(s) 776
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 708
BanII GRGCYC 1 cut(s) 361
BbrPI CACGTG 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 7, 705, 738
BccI CCATC 2 cut(s) 152, 806
BceAI ACGGC 2 cut(s) 98, 696
BcnI CCSGG 5 cut(s) 356, 361, 514, 522, 592
BcoDI GTCTC 3 cut(s) 315, 383, 511
BfaI CTAG 2 cut(s) 465, 734
BfuAI ACCTGC 1 cut(s) 409
BglII AGATCT 1 cut(s) 11
BisI GCNGC 4 cut(s) 18, 21, 719, 752
BlpI GCTNAGC 2 cut(s) 365, 665
BlsI GCNGC 4 cut(s) 19, 22, 720, 753
Bme1390I CCNGG 5 cut(s) 356, 361, 514, 522, 592
Bme18I GGWCC 1 cut(s) 307
BmgBI CACGTC 2 cut(s) 377, 430
BmgT120I GGNCC 3 cut(s) 307, 357, 358
BmiI GGNNCC 3 cut(s) 353, 359, 710
BmrFI CCNGG 5 cut(s) 356, 361, 514, 522, 592
BmsI GCATC 3 cut(s) 102, 703, 835
Bpu1102I GCTNAGC 2 cut(s) 365, 665
Bpu14I TTCGAA 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 5 cut(s) 356, 361, 514, 522, 592
BsaAI YACGTR 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 1 cut(s) 851
BsaWI WCCGGW 2 cut(s) 348, 528
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 508, 538
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 355, 528, 857
Bse3DI GCAATG 1 cut(s) 1015
BseDI CCNNGG 1 cut(s) 851
BseGI GGATG 3 cut(s) 126, 257, 769
BseLI CCNNNNNNNGG 4 cut(s) 339, 355, 528, 857
BseMI GCAATG 1 cut(s) 1015
BseMII CTCAG 4 cut(s) 317, 356, 656, 905
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 3 cut(s) 7, 705, 738
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 359, 932
BshNI GGYRCC 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 7 cut(s) 349, 355, 361, 514, 522, 529, 592
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 4 cut(s) 339, 355, 528, 857
BsmAI GTCTC 3 cut(s) 315, 383, 511
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 2 cut(s) 359, 932
Bso31I GGTCTC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 776
Bsp120I GGGCCC 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 361, 426
Bsp143I GATC 4 cut(s) 11, 70, 566, 594
Bsp1720I GCTNAGC 2 cut(s) 365, 665
BspACI CCGC 4 cut(s) 18, 91, 558, 793
BspANI GGCC 2 cut(s) 359, 932
BspCNI CTCAG 4 cut(s) 316, 357, 657, 906
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 3 cut(s) 353, 359, 710
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 776
BspT107I GGYRCC 1 cut(s) 708
BspTNI GGTCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 1015
BssECI CCNNGG 1 cut(s) 851
BssMI GATC 4 cut(s) 11, 70, 566, 594
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 4 cut(s) 154, 183, 386, 743
Bst6I CTCTTC 4 cut(s) 44, 137, 576, 821
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 678
BstBI TTCGAA 1 cut(s) 776
BstC8I GCNNGC 2 cut(s) 399, 481
BstDEI CTNAG 6 cut(s) 303, 365, 665, 698, 887, 914
BstEII GGTNACC 1 cut(s) 531
BstF5I GGATG 3 cut(s) 126, 257, 769
BstFNI CGCG 1 cut(s) 158
BstHHI GCGC 3 cut(s) 160, 718, 850
BstKTI GATC 4 cut(s) 14, 73, 569, 597
BstMAI GTCTC 3 cut(s) 315, 383, 511
BstMBI GATC 4 cut(s) 11, 70, 566, 594
BstMWI GCNNNNNNNGC 2 cut(s) 661, 757
BstPI GGTNACC 1 cut(s) 531
BstSCI CCNGG 5 cut(s) 354, 359, 512, 520, 590
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 7, 705, 738
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 2 cut(s) 359, 932
BtgZI GCGATG 1 cut(s) 460
BtrI CACGTC 2 cut(s) 377, 430
BtsCI GGATG 3 cut(s) 126, 257, 769
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 399, 481
CfoI GCGC 3 cut(s) 160, 718, 850
Cfr13I GGNCC 3 cut(s) 307, 357, 358
CseI GACGC 2 cut(s) 119, 157
Csp6I GTAC 2 cut(s) 817, 1049
CviAII CATG 2 cut(s) 249, 950
CviQI GTAC 2 cut(s) 817, 1049
DdeI CTNAG 6 cut(s) 303, 365, 665, 698, 887, 914
DpnI GATC 4 cut(s) 13, 72, 568, 596
DpnII GATC 4 cut(s) 11, 70, 566, 594
DraIII CACNNNGTG 1 cut(s) 415
Eam1104I CTCTTC 4 cut(s) 44, 137, 576, 821
EarI CTCTTC 4 cut(s) 44, 137, 576, 821
Eco147I AGGCCT 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 557
Eco72I CACGTG 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 2 cut(s) 252, 953
FaiI YATR 6 cut(s) 250, 604, 629, 905, 927, 951
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 496
FatI CATG 2 cut(s) 248, 949
Fnu4HI GCNGC 4 cut(s) 18, 21, 719, 752
FokI GGATG 3 cut(s) 113, 244, 776
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 4 cut(s) 18, 21, 719, 752
FspBI CTAG 2 cut(s) 465, 734
GlaI GCGC 3 cut(s) 159, 717, 849
GluI GCNGC 4 cut(s) 18, 21, 719, 752
HaeIII GGCC 2 cut(s) 359, 932
HapII CCGG 7 cut(s) 349, 355, 361, 514, 522, 529, 592
HgaI GACGC 2 cut(s) 119, 157
HhaI GCGC 3 cut(s) 160, 718, 850
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 252, 953
Hin6I GCGC 3 cut(s) 158, 716, 848
HinP1I GCGC 3 cut(s) 158, 716, 848
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 6 cut(s) 287, 343, 391, 485, 638, 910
HpaII CCGG 7 cut(s) 349, 355, 361, 514, 522, 529, 592
HphI GGTGA 2 cut(s) 88, 847
Hpy188III TCNNGA 1 cut(s) 658
Hpy99I CGWCG 3 cut(s) 113, 158, 431
HpyAV CCTTC 4 cut(s) 214, 549, 655, 659
HpyCH4III ACNGT 4 cut(s) 154, 183, 386, 743
HpyCH4IV ACGT 3 cut(s) 376, 429, 677
HpyCH4V TGCA 9 cut(s) 48, 282, 418, 606, 721, 754, 925, 968, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 661, 757
HpyF3I CTNAG 6 cut(s) 303, 365, 665, 698, 887, 914
HpySE526I ACGT 3 cut(s) 376, 429, 677
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 252, 953
HspAI GCGC 3 cut(s) 158, 716, 848
Kzo9I GATC 4 cut(s) 11, 70, 566, 594
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 951
Lsp1109I GCAGC 3 cut(s) 7, 705, 738
LweI GCATC 3 cut(s) 102, 703, 835
MaeI CTAG 2 cut(s) 465, 734
MaeII ACGT 3 cut(s) 376, 429, 677
MaeIII GTNAC 3 cut(s) 264, 531, 917
MalI GATC 4 cut(s) 13, 72, 568, 596
MboI GATC 4 cut(s) 11, 70, 566, 594
MboII GAAGA 9 cut(s) 31, 34, 40, 124, 534, 563, 838, 850, 965
MfeI CAATTG 1 cut(s) 1036
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 361, 426
MluCI AATT 3 cut(s) 277, 779, 1036
MlyI GAGTC 3 cut(s) 296, 479, 647
MmeI TCCRAC 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 3 cut(s) 491, 506, 728
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 7 cut(s) 349, 355, 361, 514, 522, 529, 592
MspR9I CCNGG 5 cut(s) 356, 361, 514, 522, 592
MunI CAATTG 1 cut(s) 1036
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 661, 757
NciI CCSGG 5 cut(s) 356, 361, 514, 522, 592
NdeII GATC 4 cut(s) 11, 70, 566, 594
NlaIII CATG 2 cut(s) 252, 953
NlaIV GGNNCC 3 cut(s) 353, 359, 710
NmeAIII GCCGAG 1 cut(s) 876
NmuCI GTSAC 1 cut(s) 264
NspV TTCGAA 1 cut(s) 776
PaqCI CACCTGC 1 cut(s) 409
PceI AGGCCT 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 3 cut(s) 343, 391, 910
PfoI TCCNGGA 2 cut(s) 512, 590
PkrI GCNGC 4 cut(s) 19, 22, 720, 753
PleI GAGTC 3 cut(s) 295, 479, 646
PmaCI CACGTG 1 cut(s) 678
PmlI CACGTG 1 cut(s) 678
PpsI GAGTC 3 cut(s) 295, 479, 646
Ppu21I YACGTR 1 cut(s) 678
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
PspCI CACGTG 1 cut(s) 678
PspEI GGTNACC 1 cut(s) 531
PspN4I GGNNCC 3 cut(s) 353, 359, 710
PspOMI GGGCCC 1 cut(s) 357
PspPI GGNCC 3 cut(s) 307, 357, 358
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 2 cut(s) 818, 1050
RsaNI GTAC 2 cut(s) 817, 1049
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 491, 506, 728
SatI GCNGC 4 cut(s) 18, 21, 719, 752
Sau3AI GATC 4 cut(s) 11, 70, 566, 594
Sau96I GGNCC 3 cut(s) 307, 357, 358
SchI GAGTC 3 cut(s) 296, 479, 647
ScrFI CCNGG 5 cut(s) 356, 361, 514, 522, 592
SduI GDGCHC 2 cut(s) 361, 426
SfaNI GCATC 3 cut(s) 102, 703, 835
SfuI TTCGAA 1 cut(s) 776
SinI GGWCC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 3 cut(s) 277, 779, 1036
SseBI AGGCCT 1 cut(s) 932
SsiI CCGC 4 cut(s) 18, 91, 558, 793
SspI AATATT 1 cut(s) 85
SspMI CTAG 2 cut(s) 465, 734
StuI AGGCCT 1 cut(s) 932
StyD4I CCNGG 5 cut(s) 354, 359, 512, 520, 590
TaaI ACNGT 4 cut(s) 154, 183, 386, 743
TaiI ACGT 3 cut(s) 379, 432, 680
TaqI TCGA 6 cut(s) 216, 426, 672, 747, 776, 1029
TasI AATT 3 cut(s) 277, 779, 1036
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 3 cut(s) 343, 391, 910
Tru1I TTAA 3 cut(s) 491, 506, 728
Tru9I TTAA 3 cut(s) 491, 506, 728
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 3 cut(s) 20, 718, 751
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 72, 966
VpaK11BI GGWCC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 2 cut(s) 465, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.