Rorug02G0485700

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016063
Physical Location & Seq
Forward (+)
61554553 .. 61555112
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0485700.1

Sequence Viewer

Length: 474 bp
ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGACGAGGGCGGCTGCTCTAAGGGAAAAGGAAAGTCTGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGAAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCTCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGACCTCGGGTGGTTCCCTCGCGGGAAGATGGCCGGCCCTTTTCAAGAGGTGGCATTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGTATGTGTTGATACTTTTCCCAATTTTAGATCTTTATAGTCTTTCTGATGCATTTGTTACTCTCTGCTATACACTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

157

Amino Acids

16.31

Weight (kDa)

9.02

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rotamase_3 PF13616 44 - 134 9.9e-14 PPIC-type PPIASE domain
Rotamase PF00639 77 - 135 2e-12 PPIC-type PPIASE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03220
fragaria_vesca FvH4_6g44010
malus_domestica MD09G1101500.v1.1 MD17G1089100.v1.1
prunus_persica Prupe.3G224700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160751
rosa_laevigata RLG00000021239
rosa_multiflora Rmu_sc0002773.1_g000009
rosa_roxburghii Rroxscaffold_2G00089400
rosa_rugosa Rorug02G0485700
rosa_samantha Rh2AG550700 Rh2BG565300 Rh2CG535100 Rh2DG574200
rosa_wichuraiana Rw2G045630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 1 cut(s) 315
AciI CCGC 7 cut(s) 45, 63, 99, 236, 291, 315, 375
AcoI YGGCCR 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 338, 385
AleI CACNNNNGTG 2 cut(s) 131, 395
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 4 cut(s) 18, 252, 324, 328
ApeKI GCWGC 2 cut(s) 47, 66
AspS9I GGNCC 2 cut(s) 226, 329
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 53, 59
BccI CCATC 2 cut(s) 104, 316
BceAI ACGGC 2 cut(s) 217, 232
BfuAI ACCTGC 1 cut(s) 131
BglII AGATCT 1 cut(s) 421
BisI GCNGC 5 cut(s) 45, 48, 64, 67, 292
BlsI GCNGC 5 cut(s) 46, 49, 65, 68, 293
BmcAI AGTACT 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 226, 329
BmiI GGNNCC 3 cut(s) 121, 228, 308
BmsI GCATC 1 cut(s) 430
BsaAI YACGTR 2 cut(s) 129, 393
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 15, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 2 cut(s) 50, 326
Bse1I ACTGG 1 cut(s) 471
BseDI CCNNGG 2 cut(s) 15, 298
BseLI CCNNNNNNNGG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 471
BseXI GCAGC 2 cut(s) 53, 59
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 4 cut(s) 20, 254, 326, 330
BshNI GGYRCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 4 cut(s) 21, 51, 233, 327
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 4 cut(s) 20, 254, 326, 330
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 171, 421
BspACI CCGC 7 cut(s) 45, 63, 99, 236, 291, 315, 375
BspANI GGCC 4 cut(s) 20, 254, 326, 330
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 121, 228, 308
BspMI ACCTGC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 2 cut(s) 50, 326
BsrI ACTGG 1 cut(s) 471
BssAI RCCGGY 2 cut(s) 50, 326
BssECI CCNNGG 2 cut(s) 15, 298
BssMI GATC 2 cut(s) 171, 421
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 12
BstBAI YACGTR 2 cut(s) 129, 393
BstC8I GCNNGC 3 cut(s) 52, 206, 328
BstDEI CTNAG 2 cut(s) 72, 246
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 2 cut(s) 174, 424
BstMBI GATC 2 cut(s) 171, 421
BstMWI GCNNNNNNNGC 3 cut(s) 60, 242, 251
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 53, 59
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 4 cut(s) 20, 254, 326, 330
BtsIMutI CAGTG 1 cut(s) 464
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 3 cut(s) 52, 206, 328
Cfr10I RCCGGY 2 cut(s) 50, 326
Cfr13I GGNCC 2 cut(s) 226, 329
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 262
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 72, 246
DpnI GATC 2 cut(s) 173, 423
DpnII GATC 2 cut(s) 171, 421
EaeI YGGCCR 1 cut(s) 324
EciI GGCGGA 2 cut(s) 114, 251
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 15
FaiI YATR 5 cut(s) 132, 149, 396, 429, 462
FaqI GGGAC 1 cut(s) 212
FauI CCCGC 1 cut(s) 308
Fnu4HI GCNGC 5 cut(s) 45, 48, 64, 67, 292
FriOI GRGCYC 1 cut(s) 117
FseI GGCCGGCC 1 cut(s) 330
Fsp4HI GCNGC 5 cut(s) 45, 48, 64, 67, 292
GluI GCNGC 5 cut(s) 45, 48, 64, 67, 292
HaeIII GGCC 4 cut(s) 20, 254, 326, 330
HapII CCGG 4 cut(s) 21, 51, 233, 327
HgaI GACGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 12
HpaII CCGG 4 cut(s) 21, 51, 233, 327
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 6 cut(s) 109, 212, 259, 268, 360, 439
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 390
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 130, 285
HpyCH4IV ACGT 2 cut(s) 128, 392
HpyCH4V TGCA 3 cut(s) 126, 196, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 242, 251
HpyF3I CTNAG 2 cut(s) 72, 246
HpySE526I ACGT 2 cut(s) 128, 392
Hsp92I GRCGYC 1 cut(s) 12
KroI GCCGGC 2 cut(s) 50, 326
KroNI GCCGGC 2 cut(s) 52, 328
Kzo9I GATC 2 cut(s) 171, 421
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 2 cut(s) 53, 59
LweI GCATC 1 cut(s) 430
MaeII ACGT 2 cut(s) 128, 392
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 173, 423
MboI GATC 2 cut(s) 171, 421
MboII GAAGA 2 cut(s) 295, 331
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 414
MnlI CCTC 7 cut(s) 17, 52, 240, 265, 308, 321, 334
Mph1103I ATGCAT 1 cut(s) 445
MroNI GCCGGC 2 cut(s) 50, 326
MslI CAYNNNNRTG 2 cut(s) 131, 395
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 4 cut(s) 21, 51, 233, 327
Mva1269I GAATGC 1 cut(s) 347
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 60, 242, 251
NaeI GCCGGC 2 cut(s) 52, 328
NdeII GATC 2 cut(s) 171, 421
NgoMIV GCCGGC 2 cut(s) 50, 326
NlaIV GGNNCC 3 cut(s) 121, 228, 308
NmeAIII GCCGAG 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 445
OliI CACNNNNGTG 2 cut(s) 131, 395
PaqCI CACCTGC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 347
PdiI GCCGGC 2 cut(s) 52, 328
PkrI GCNGC 5 cut(s) 46, 49, 65, 68, 293
Ppu21I YACGTR 2 cut(s) 129, 393
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 121, 228, 308
PspPI GGNCC 2 cut(s) 226, 329
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 1 cut(s) 421
RigI GGCCGGCC 1 cut(s) 330
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 2 cut(s) 131, 395
SatI GCNGC 5 cut(s) 45, 48, 64, 67, 292
Sau3AI GATC 2 cut(s) 171, 421
Sau96I GGNCC 2 cut(s) 226, 329
ScaI AGTACT 1 cut(s) 263
SduI GDGCHC 1 cut(s) 117
SetI ASST 7 cut(s) 106, 125, 131, 228, 300, 345, 395
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 131, 395
Sse9I AATT 1 cut(s) 414
SsiI CCGC 7 cut(s) 45, 63, 99, 236, 291, 315, 375
StyI CCWWGG 1 cut(s) 15
TaiI ACGT 2 cut(s) 131, 395
TasI AATT 1 cut(s) 414
TatI WGTACW 1 cut(s) 261
TauI GCSGC 3 cut(s) 47, 66, 294
TscAI CASTG 1 cut(s) 471
TseI GCWGC 2 cut(s) 47, 66
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.