Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002792.1

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Forward (+)

46496 .. 46912

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ctgtgcataccctacgctgacctcccgccgccggaccgctcaacccgcgcaaagctagtgaccaaggccctcgagctcggctactccggcgtcgcctacaaccgtacaatcaagggtgtcatgtccaatcgcgaccattgctccatctccctcctcactttcccttctctcctcaaacactcacctcacttcacctcctccgtctgcttccaccgcaacctcctcggcgtcccacgcgccacccctttcagccaatacacgcgcctcactgtctgtgtcgaaacccttacccaggctcaggcgctcaattccggtaaccccgttttgaagacctacgatttggtggctgtcaagcccatgaaccaatctgctttcgatcaggcatgtgagaaaagtgggagagggagacaaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

138

Amino Acids

15.24

Weight (kDa)

9.67

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	10 - 131	9.6e-12	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	4 cut(s)	48, 132, 237, 262
AciI	CCGC	5 cut(s)	26, 29, 37, 46, 214
AcyI	GRCGYC	2 cut(s)	90, 228
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	31, 292, 298
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	55, 76
AluI	AGCT	2 cut(s)	55, 76
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspLEI	GCGC	4 cut(s)	50, 239, 264, 304
AspS9I	GGNCC	2 cut(s)	34, 67
AsuHPI	GGTGA	2 cut(s)	174, 184
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	305
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	34, 67
BmrFI	CCNGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	90, 228
BsaJI	CCNNGG	3 cut(s)	63, 223, 291
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 292, 298
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	63, 223, 291
BseLI	CCNNNNNNNGG	3 cut(s)	31, 292, 298
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	4 cut(s)	143, 161, 187, 212
Bsh1236I	CGCG	4 cut(s)	48, 132, 237, 262
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	32, 87, 312
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	31, 292, 298
BsmAI	GTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	376
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	5 cut(s)	26, 29, 37, 46, 214
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	4 cut(s)	48, 132, 237, 262
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	63, 223, 291
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	2 cut(s)	90, 228
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	104, 271
BstACI	GRCGYC	2 cut(s)	90, 228
BstDEI	CTNAG	1 cut(s)	297
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstFNI	CGCG	4 cut(s)	48, 132, 237, 262
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	4 cut(s)	50, 239, 264, 304
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 87, 138, 213, 234
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	291
BstUI	CGCG	4 cut(s)	48, 132, 237, 262
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	132
CfoI	GCGC	4 cut(s)	50, 239, 264, 304
Cfr13I	GGNCC	2 cut(s)	34, 67
CpoI	CGGWCCG	1 cut(s)	34
CseI	GACGC	2 cut(s)	79, 217
Csp6I	GTAC	1 cut(s)	105
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	3 cut(s)	121, 358, 384
CviJI	RGCY	8 cut(s)	55, 68, 76, 81, 252, 296, 347, 355
CviKI_1	RGCY	8 cut(s)	55, 68, 76, 81, 252, 296, 347, 355
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	124, 361, 387
FaiI	YATR	4 cut(s)	8, 122, 359, 385
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	120, 357, 383
FauI	CCCGC	2 cut(s)	33, 53
Fnu4HI	GCNGC	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	4 cut(s)	49, 238, 263, 303
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	3 cut(s)	32, 87, 312
HgaI	GACGC	2 cut(s)	79, 217
HhaI	GCGC	4 cut(s)	50, 239, 264, 304
Hin1I	GRCGYC	2 cut(s)	90, 228
Hin1II	CATG	3 cut(s)	124, 361, 387
Hin6I	GCGC	4 cut(s)	48, 237, 262, 302
HinP1I	GCGC	4 cut(s)	48, 237, 262, 302
HpaII	CCGG	3 cut(s)	32, 87, 312
HphI	GGTGA	2 cut(s)	174, 184
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	104, 271
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 87, 138, 213, 234
HpyF3I	CTNAG	1 cut(s)	297
Hsp92I	GRCGYC	2 cut(s)	90, 228
Hsp92II	CATG	3 cut(s)	124, 361, 387
HspAI	GCGC	4 cut(s)	48, 237, 262, 302
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	7 cut(s)	45, 100, 278, 284, 305, 325, 365
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	58, 314
MalI	GATC	1 cut(s)	378
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	1 cut(s)	376
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	307
MspI	CCGG	3 cut(s)	32, 87, 312
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	4 cut(s)	48, 132, 237, 262
MwoI	GCNNNNNNNGC	5 cut(s)	45, 87, 138, 213, 234
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	124, 361, 387
NmeAIII	GCCGAG	2 cut(s)	57, 204
NmuCI	GTSAC	1 cut(s)	58
NruI	TCGCGA	1 cut(s)	132
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	34, 67
PspXI	VCTCGAGB	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	2 cut(s)	34, 67
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	24, 57, 78, 187, 197, 222, 335
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	5 cut(s)	26, 29, 37, 46, 214
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	104, 271
TaqI	TCGA	3 cut(s)	72, 279, 375
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	374
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	290
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.