Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g29160 |
| rosa_chinensis | RchiOBHm_Chr6g0298021 |
| rosa_laevigata | RLG00000011542 |
| rosa_multiflora | Rmu_co8512357.1_g000001 Rmu_sc0002800.1_g000021 |
| rosa_rugosa | Rorug06G0278100 |
| rosa_samantha | Rh6AG388400 Rh6BG396600 Rh6CG402600 Rh6DG388800 |
| rosa_wichuraiana | Rw6G033900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 360, 1733 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2423 |
| Acc36I | ACCTGC | 2 cut(s) | 273, 1889 |
| Acc65I | GGTACC | 1 cut(s) | 3285 |
| AccB1I | GGYRCC | 3 cut(s) | 521, 870, 3285 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2597 |
| AccI | GTMKAC | 2 cut(s) | 1394, 1948 |
| AccII | CGCG | 1 cut(s) | 1446 |
| AciI | CCGC | 8 cut(s) | 1221, 1833, 1860, 1877, 1910, 1930, 1956, 3293 |
| AclWI | GGATC | 5 cut(s) | 500, 680, 1303, 1541, 3227 |
| AcoI | YGGCCR | 3 cut(s) | 638, 1222, 1604 |
| AcsI | RAATTY | 4 cut(s) | 765, 1135, 1683, 3067 |
| AcuI | CTGAAG | 2 cut(s) | 2888, 3017 |
| AcyI | GRCGYC | 3 cut(s) | 522, 871, 2724 |
| AfaI | GTAC | 9 cut(s) | 350, 566, 1232, 2043, 2327, 2624, 2642, 3101, 3287 |
| AfeI | AGCGCT | 2 cut(s) | 1271, 2849 |
| AflIII | ACRYGT | 3 cut(s) | 1943, 2500, 2679 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1517, 1549 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 177, 209, 664, 696 |
| Alw21I | GWGCWC | 2 cut(s) | 2964, 2995 |
| Alw26I | GTCTC | 1 cut(s) | 477 |
| AlwI | GGATC | 5 cut(s) | 500, 680, 1303, 1541, 3227 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 898 |
| Ama87I | CYCGRG | 2 cut(s) | 932, 2002 |
| Aor51HI | AGCGCT | 2 cut(s) | 1271, 2849 |
| ApoI | RAATTY | 4 cut(s) | 765, 1135, 1683, 3067 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 782, 814, 2312, 2344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3005 |
| Asp718I | GGTACC | 1 cut(s) | 3285 |
| AspA2I | CCTAGG | 1 cut(s) | 2758 |
| AspLEI | GCGC | 5 cut(s) | 524, 751, 873, 1272, 2850 |
| AsuC2I | CCSGG | 2 cut(s) | 875, 1710 |
| AsuHPI | GGTGA | 5 cut(s) | 1082, 1333, 1874, 2207, 3139 |
| AsuNHI | GCTAGC | 1 cut(s) | 2566 |
| AvaI | CYCGRG | 2 cut(s) | 932, 2002 |
| AvaII | GGWCC | 7 cut(s) | 233, 262, 556, 2320, 2416, 2768, 3161 |
| AvrII | CCTAGG | 1 cut(s) | 2758 |
| BalI | TGGCCA | 2 cut(s) | 640, 1606 |
| BanI | GGYRCC | 3 cut(s) | 521, 870, 3285 |
| BanII | GRGCYC | 3 cut(s) | 663, 2815, 2964 |
| BauI | CACGAG | 1 cut(s) | 97 |
| BbsI | GAAGAC | 1 cut(s) | 2177 |
| Bbv12I | GWGCWC | 2 cut(s) | 2964, 2995 |
| BbvCI | CCTCAGC | 1 cut(s) | 611 |
| BciVI | GTATCC | 1 cut(s) | 1457 |
| BcnI | CCSGG | 2 cut(s) | 875, 1710 |
| BcoDI | GTCTC | 1 cut(s) | 477 |
| BfmI | CTRYAG | 4 cut(s) | 1407, 1540, 1703, 2397 |
| BfoI | RGCGCY | 4 cut(s) | 525, 874, 1273, 2851 |
| BfuAI | ACCTGC | 2 cut(s) | 273, 1889 |
| BfuI | GTATCC | 1 cut(s) | 1457 |
| BglII | AGATCT | 1 cut(s) | 2737 |
| BlnI | CCTAGG | 1 cut(s) | 2758 |
| BlpI | GCTNAGC | 1 cut(s) | 1273 |
| Bme18I | GGWCC | 7 cut(s) | 233, 262, 556, 2320, 2416, 2768, 3161 |
| BmeT110I | CYCGRG | 2 cut(s) | 932, 2002 |
| BmrI | ACTGGG | 2 cut(s) | 2607, 2928 |
| BmtI | GCTAGC | 1 cut(s) | 2570 |
| BmuI | ACTGGG | 2 cut(s) | 2607, 2928 |
| BpiI | GAAGAC | 1 cut(s) | 2177 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2946, 2978 |
| BpmI | CTGGAG | 4 cut(s) | 641, 1795, 2948, 3186 |
| Bpu10I | CCTNAGC | 2 cut(s) | 611, 1437 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1273 |
| BpuMI | CCSGG | 2 cut(s) | 875, 1710 |
| Bsa29I | ATCGAT | 1 cut(s) | 13 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2346, 2736, 3224 |
| BsaHI | GRCGYC | 3 cut(s) | 522, 871, 2724 |
| BsaI | GGTCTC | 1 cut(s) | 477 |
| BsaJI | CCNNGG | 8 cut(s) | 25, 411, 560, 1709, 2001, 2227, 2479, 2758 |
| Bse118I | RCCGGY | 1 cut(s) | 867 |
| Bse1I | ACTGG | 3 cut(s) | 920, 2602, 2923 |
| Bse3DI | GCAATG | 3 cut(s) | 1736, 2500, 3020 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2346, 2736, 3224 |
| BseCI | ATCGAT | 1 cut(s) | 13 |
| BseDI | CCNNGG | 8 cut(s) | 25, 411, 560, 1709, 2001, 2227, 2479, 2758 |
| BseJI | GATNNNNATC | 3 cut(s) | 2346, 2736, 3224 |
| BseMI | GCAATG | 3 cut(s) | 1736, 2500, 3020 |
| BseMII | CTCAG | 8 cut(s) | 602, 800, 890, 1175, 1287, 1883, 2279, 3041 |
| BseNI | ACTGG | 3 cut(s) | 920, 2602, 2923 |
| BseRI | GAGGAG | 1 cut(s) | 465 |
| BseX3I | CGGCCG | 1 cut(s) | 1222 |
| BsgI | GTGCAG | 2 cut(s) | 883, 1917 |
| Bsh1236I | CGCG | 1 cut(s) | 1446 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1225 |
| BshNI | GGYRCC | 3 cut(s) | 521, 870, 3285 |
| BshVI | ATCGAT | 1 cut(s) | 13 |
| BsiEI | CGRYCG | 1 cut(s) | 1225 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2964, 2995 |
| BsiHKCI | CYCGRG | 2 cut(s) | 932, 2002 |
| BsiSI | CCGG | 3 cut(s) | 868, 875, 1709 |
| BslFI | GGGAC | 4 cut(s) | 395, 542, 2333, 2895 |
| BsmAI | GTCTC | 1 cut(s) | 477 |
| BsmFI | GGGAC | 4 cut(s) | 395, 542, 2333, 2895 |
| BsmI | GAATGC | 2 cut(s) | 1298, 1785 |
| Bso31I | GGTCTC | 1 cut(s) | 477 |
| BsoBI | CYCGRG | 2 cut(s) | 932, 2002 |
| Bsp1286I | GDGCHC | 4 cut(s) | 663, 2815, 2964, 2995 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1273 |
| Bsp19I | CCATGG | 1 cut(s) | 25 |
| Bsp68I | TCGCGA | 1 cut(s) | 1446 |
| BspACI | CCGC | 8 cut(s) | 1221, 1833, 1860, 1877, 1910, 1930, 1956, 3293 |
| BspCNI | CTCAG | 8 cut(s) | 603, 801, 891, 1174, 1286, 1884, 2278, 3042 |
| BspDI | ATCGAT | 1 cut(s) | 13 |
| BspFNI | CGCG | 1 cut(s) | 1446 |
| BspHI | TCATGA | 1 cut(s) | 478 |
| BspMAI | CTGCAG | 3 cut(s) | 1544, 1707, 2401 |
| BspMI | ACCTGC | 2 cut(s) | 273, 1889 |
| BspOI | GCTAGC | 1 cut(s) | 2570 |
| BspPI | GGATC | 5 cut(s) | 500, 680, 1303, 1541, 3227 |
| BspQI | GCTCTTC | 2 cut(s) | 2363, 2936 |
| BspT107I | GGYRCC | 3 cut(s) | 521, 870, 3285 |
| BspTNI | GGTCTC | 1 cut(s) | 477 |
| BsrDI | GCAATG | 3 cut(s) | 1736, 2500, 3020 |
| BsrFI | RCCGGY | 1 cut(s) | 867 |
| BsrI | ACTGG | 3 cut(s) | 920, 2602, 2923 |
| BssAI | RCCGGY | 1 cut(s) | 867 |
| BssECI | CCNNGG | 8 cut(s) | 25, 411, 560, 1709, 2001, 2227, 2479, 2758 |
| BssNAI | GTATAC | 1 cut(s) | 1949 |
| BssNI | GRCGYC | 3 cut(s) | 522, 871, 2724 |
| BssSI | CACGAG | 1 cut(s) | 97 |
| BssT1I | CCWWGG | 3 cut(s) | 25, 411, 2758 |
| Bst1107I | GTATAC | 1 cut(s) | 1949 |
| Bst2BI | CACGAG | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 8 cut(s) | 259, 353, 1035, 1408, 2096, 2420, 2982, 2990 |
| Bst6I | CTCTTC | 3 cut(s) | 2363, 2901, 2936 |
| BstACI | GRCGYC | 3 cut(s) | 522, 871, 2724 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 288, 2222 |
| BstC8I | GCNNGC | 6 cut(s) | 444, 869, 1579, 1600, 1604, 2568 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 892 |
| BstFNI | CGCG | 1 cut(s) | 1446 |
| BstH2I | RGCGCY | 4 cut(s) | 525, 874, 1273, 2851 |
| BstHHI | GCGC | 5 cut(s) | 524, 751, 873, 1272, 2850 |
| BstMAI | GTCTC | 1 cut(s) | 477 |
| BstMCI | CGRYCG | 1 cut(s) | 1225 |
| BstNSI | RCATGY | 6 cut(s) | 716, 1757, 1939, 1947, 2504, 2683 |
| BstSFI | CTRYAG | 4 cut(s) | 1407, 1540, 1703, 2397 |
| BstUI | CGCG | 1 cut(s) | 1446 |
| BstV2I | GAAGAC | 1 cut(s) | 2177 |
| BstX2I | RGATCY | 1 cut(s) | 2737 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2413 |
| BstYI | RGATCY | 1 cut(s) | 2737 |
| BstZ17I | GTATAC | 1 cut(s) | 1949 |
| BstZI | CGGCCG | 1 cut(s) | 1222 |
| Bsu15I | ATCGAT | 1 cut(s) | 13 |
| BsuI | GTATCC | 1 cut(s) | 1457 |
| BsuTUI | ATCGAT | 1 cut(s) | 13 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtgZI | GCGATG | 1 cut(s) | 1523 |
| BtsI | GCAGTG | 5 cut(s) | 303, 510, 1549, 1748, 1848 |
| BtuMI | TCGCGA | 1 cut(s) | 1446 |
| BveI | ACCTGC | 2 cut(s) | 273, 1889 |
| Cac8I | GCNNGC | 6 cut(s) | 444, 869, 1579, 1600, 1604, 2568 |
| CaiI | CAGNNNCTG | 1 cut(s) | 898 |
| CciI | TCATGA | 1 cut(s) | 478 |
| CfoI | GCGC | 5 cut(s) | 524, 751, 873, 1272, 2850 |
| Cfr10I | RCCGGY | 1 cut(s) | 867 |
| ClaI | ATCGAT | 1 cut(s) | 13 |
| CseI | GACGC | 1 cut(s) | 2732 |
| Csp6I | GTAC | 9 cut(s) | 349, 565, 1231, 2042, 2326, 2623, 2641, 3100, 3286 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3217, 3252 |
| CviQI | GTAC | 9 cut(s) | 349, 565, 1231, 2042, 2326, 2623, 2641, 3100, 3286 |
| DinI | GGCGCC | 2 cut(s) | 523, 872 |
| DraI | TTTAAA | 2 cut(s) | 1585, 1719 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2423 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2423 |
| EaeI | YGGCCR | 3 cut(s) | 638, 1222, 1604 |
| EagI | CGGCCG | 1 cut(s) | 1222 |
| Eam1104I | CTCTTC | 3 cut(s) | 2363, 2901, 2936 |
| EarI | CTCTTC | 3 cut(s) | 2363, 2901, 2936 |
| Ecl136II | GAGCTC | 1 cut(s) | 2962 |
| EclXI | CGGCCG | 1 cut(s) | 1222 |
| Eco130I | CCWWGG | 3 cut(s) | 25, 411, 2758 |
| Eco147I | AGGCCT | 1 cut(s) | 1642 |
| Eco24I | GRGCYC | 3 cut(s) | 663, 2815, 2964 |
| Eco31I | GGTCTC | 1 cut(s) | 477 |
| Eco32I | GATATC | 1 cut(s) | 1318 |
| Eco47I | GGWCC | 7 cut(s) | 233, 262, 556, 2320, 2416, 2768, 3161 |
| Eco47III | AGCGCT | 2 cut(s) | 1271, 2849 |
| Eco52I | CGGCCG | 1 cut(s) | 1222 |
| Eco53kI | GAGCTC | 1 cut(s) | 2962 |
| Eco57I | CTGAAG | 2 cut(s) | 2888, 3017 |
| Eco88I | CYCGRG | 2 cut(s) | 932, 2002 |
| EcoICRI | GAGCTC | 1 cut(s) | 2962 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 892 |
| EcoO109I | RGGNCCY | 3 cut(s) | 233, 1969, 2320 |
| EcoRI | GAATTC | 1 cut(s) | 1135 |
| EcoRV | GATATC | 1 cut(s) | 1318 |
| EcoT14I | CCWWGG | 3 cut(s) | 25, 411, 2758 |
| EcoT38I | GRGCYC | 3 cut(s) | 663, 2815, 2964 |
| EgeI | GGCGCC | 2 cut(s) | 523, 872 |
| EheI | GGCGCC | 2 cut(s) | 523, 872 |
| ErhI | CCWWGG | 3 cut(s) | 25, 411, 2758 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 647, 679, 1075, 1107, 1219, 1251 |
| FaqI | GGGAC | 4 cut(s) | 395, 542, 2333, 2895 |
| FauI | CCCGC | 1 cut(s) | 1923 |
| FauNDI | CATATG | 2 cut(s) | 1399, 2785 |
| FblI | GTMKAC | 2 cut(s) | 1394, 1948 |
| FriOI | GRGCYC | 3 cut(s) | 663, 2815, 2964 |
| GlaI | GCGC | 5 cut(s) | 523, 750, 872, 1271, 2849 |
| GsuI | CTGGAG | 4 cut(s) | 641, 1795, 2948, 3186 |
| HaeII | RGCGCY | 4 cut(s) | 525, 874, 1273, 2851 |
| HapII | CCGG | 3 cut(s) | 868, 875, 1709 |
| HgaI | GACGC | 1 cut(s) | 2732 |
| HhaI | GCGC | 5 cut(s) | 524, 751, 873, 1272, 2850 |
| Hin1I | GRCGYC | 3 cut(s) | 522, 871, 2724 |
| Hin6I | GCGC | 5 cut(s) | 522, 749, 871, 1270, 2848 |
| HinP1I | GCGC | 5 cut(s) | 522, 749, 871, 1270, 2848 |
| HincII | GTYRAC | 2 cut(s) | 1941, 2685 |
| HindII | GTYRAC | 2 cut(s) | 1941, 2685 |
| HindIII | AAGCTT | 2 cut(s) | 1439, 2295 |
| HpaI | GTTAAC | 1 cut(s) | 1941 |
| HpaII | CCGG | 3 cut(s) | 868, 875, 1709 |
| HphI | GGTGA | 5 cut(s) | 1082, 1333, 1874, 2207, 3139 |
| Hpy166II | GTNNAC | 9 cut(s) | 262, 1341, 1395, 1865, 1941, 1949, 2234, 2525, 2685 |
| Hpy8I | GTNNAC | 9 cut(s) | 262, 1341, 1395, 1865, 1941, 1949, 2234, 2525, 2685 |
| HpyCH4III | ACNGT | 8 cut(s) | 259, 353, 1035, 1408, 2096, 2420, 2982, 2990 |
| HpyCH4IV | ACGT | 1 cut(s) | 347 |
| HpySE526I | ACGT | 1 cut(s) | 347 |
| Hsp92I | GRCGYC | 3 cut(s) | 522, 871, 2724 |
| HspAI | GCGC | 5 cut(s) | 522, 749, 871, 1270, 2848 |
| KasI | GGCGCC | 2 cut(s) | 521, 870 |
| KpnI | GGTACC | 1 cut(s) | 3289 |
| KroI | GCCGGC | 1 cut(s) | 867 |
| KroNI | GCCGGC | 1 cut(s) | 869 |
| KspAI | GTTAAC | 1 cut(s) | 1941 |
| LguI | GCTCTTC | 2 cut(s) | 2363, 2936 |
| LmnI | GCTCC | 6 cut(s) | 658, 1267, 2810, 2959, 2967, 2968 |
| MaeII | ACGT | 1 cut(s) | 347 |
| MaeIII | GTNAC | 8 cut(s) | 704, 1087, 1846, 2306, 2332, 2425, 2914, 3106 |
| MfeI | CAATTG | 1 cut(s) | 1259 |
| MflI | RGATCY | 1 cut(s) | 2737 |
| MhlI | GDGCHC | 4 cut(s) | 663, 2815, 2964, 2995 |
| MlsI | TGGCCA | 2 cut(s) | 640, 1606 |
| MluNI | TGGCCA | 2 cut(s) | 640, 1606 |
| Mly113I | GGCGCC | 2 cut(s) | 522, 871 |
| MlyI | GAGTC | 4 cut(s) | 71, 955, 1670, 3248 |
| MmeI | TCCRAC | 4 cut(s) | 470, 939, 1824, 2795 |
| Mox20I | TGGCCA | 2 cut(s) | 640, 1606 |
| MroNI | GCCGGC | 1 cut(s) | 867 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3005 |
| MscI | TGGCCA | 2 cut(s) | 640, 1606 |
| MslI | CAYNNNNRTG | 4 cut(s) | 711, 1823, 2193, 2244 |
| Msp20I | TGGCCA | 2 cut(s) | 640, 1606 |
| MspA1I | CMGCKG | 3 cut(s) | 610, 2866, 2974 |
| MspI | CCGG | 3 cut(s) | 868, 875, 1709 |
| MunI | CAATTG | 1 cut(s) | 1259 |
| Mva1269I | GAATGC | 2 cut(s) | 1298, 1785 |
| MvnI | CGCG | 1 cut(s) | 1446 |
| NaeI | GCCGGC | 1 cut(s) | 869 |
| NarI | GGCGCC | 2 cut(s) | 522, 871 |
| NciI | CCSGG | 2 cut(s) | 875, 1710 |
| NcoI | CCATGG | 1 cut(s) | 25 |
| NdeI | CATATG | 2 cut(s) | 1399, 2785 |
| NgoMIV | GCCGGC | 1 cut(s) | 867 |
| NheI | GCTAGC | 1 cut(s) | 2566 |
| NmeAIII | GCCGAG | 1 cut(s) | 601 |
| NmuCI | GTSAC | 6 cut(s) | 704, 1846, 2306, 2332, 2425, 2914 |
| NruI | TCGCGA | 1 cut(s) | 1446 |
| NspI | RCATGY | 6 cut(s) | 716, 1757, 1939, 1947, 2504, 2683 |
| PagI | TCATGA | 1 cut(s) | 478 |
| PceI | AGGCCT | 1 cut(s) | 1642 |
| PciI | ACATGT | 3 cut(s) | 1943, 2500, 2679 |
| PciSI | GCTCTTC | 2 cut(s) | 2363, 2936 |
| PctI | GAATGC | 2 cut(s) | 1298, 1785 |
| PdiI | GCCGGC | 1 cut(s) | 869 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3005 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2597 |
| PfoI | TCCNGGA | 3 cut(s) | 2806, 2964, 3163 |
| PleI | GAGTC | 4 cut(s) | 70, 954, 1669, 3248 |
| PluTI | GGCGCC | 2 cut(s) | 525, 874 |
| PpsI | GAGTC | 4 cut(s) | 70, 954, 1669, 3248 |
| PpuMI | RGGWCCY | 2 cut(s) | 233, 2320 |
| PscI | ACATGT | 3 cut(s) | 1943, 2500, 2679 |
| PsiI | TTATAA | 2 cut(s) | 360, 1733 |
| Psp124BI | GAGCTC | 1 cut(s) | 2964 |
| Psp5II | RGGWCCY | 2 cut(s) | 233, 2320 |
| PspPPI | RGGWCCY | 2 cut(s) | 233, 2320 |
| PstI | CTGCAG | 3 cut(s) | 1544, 1707, 2401 |
| PstNI | CAGNNNCTG | 1 cut(s) | 898 |
| PsuI | RGATCY | 1 cut(s) | 2737 |
| PvuII | CAGCTG | 3 cut(s) | 610, 2866, 2974 |
| RruI | TCGCGA | 1 cut(s) | 1446 |
| RsaI | GTAC | 9 cut(s) | 350, 566, 1232, 2043, 2327, 2624, 2642, 3101, 3287 |
| RsaNI | GTAC | 9 cut(s) | 349, 565, 1231, 2042, 2326, 2623, 2641, 3100, 3286 |
| RseI | CAYNNNNRTG | 4 cut(s) | 711, 1823, 2193, 2244 |
| SacI | GAGCTC | 1 cut(s) | 2964 |
| SapI | GCTCTTC | 2 cut(s) | 2363, 2936 |
| SchI | GAGTC | 4 cut(s) | 71, 955, 1670, 3248 |
| SduI | GDGCHC | 4 cut(s) | 663, 2815, 2964, 2995 |
| SfcI | CTRYAG | 4 cut(s) | 1407, 1540, 1703, 2397 |
| SfoI | GGCGCC | 2 cut(s) | 523, 872 |
| SinI | GGWCC | 7 cut(s) | 233, 262, 556, 2320, 2416, 2768, 3161 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 711, 1823, 2193, 2244 |
| SseBI | AGGCCT | 1 cut(s) | 1642 |
| SsiI | CCGC | 8 cut(s) | 1221, 1833, 1860, 1877, 1910, 1930, 1956, 3293 |
| SspDI | GGCGCC | 2 cut(s) | 521, 870 |
| SspI | AATATT | 1 cut(s) | 1364 |
| SstI | GAGCTC | 1 cut(s) | 2964 |
| StuI | AGGCCT | 1 cut(s) | 1642 |
| StyI | CCWWGG | 3 cut(s) | 25, 411, 2758 |
| TaaI | ACNGT | 8 cut(s) | 259, 353, 1035, 1408, 2096, 2420, 2982, 2990 |
| TaiI | ACGT | 1 cut(s) | 350 |
| TaqI | TCGA | 8 cut(s) | 13, 65, 177, 726, 801, 942, 2288, 3252 |
| TaqII | GACCGA | 1 cut(s) | 544 |
| TatI | WGTACW | 1 cut(s) | 2325 |
| TauI | GCSGC | 4 cut(s) | 1224, 1835, 1880, 1958 |
| TseFI | GTSAC | 6 cut(s) | 704, 1846, 2306, 2332, 2425, 2914 |
| Tsp45I | GTSAC | 6 cut(s) | 704, 1846, 2306, 2332, 2425, 2914 |
| TspDTI | ATGAA | 8 cut(s) | 1116, 1148, 1664, 2177, 2358, 2498, 2641, 2748 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2597 |
| VpaK11BI | GGWCC | 7 cut(s) | 233, 262, 556, 2320, 2416, 2768, 3161 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 892 |
| XapI | RAATTY | 4 cut(s) | 765, 1135, 1683, 3067 |
| XbaI | TCTAGA | 2 cut(s) | 2026, 3257 |
| XceI | RCATGY | 6 cut(s) | 716, 1757, 1939, 1947, 2504, 2683 |
| XmaJI | CCTAGG | 1 cut(s) | 2758 |
| XmiI | GTMKAC | 2 cut(s) | 1394, 1948 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3005 |