Rorug06G0278100
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012916
Physical Location & Seq
Forward (+)
42570794 .. 42574954
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0278100.1

Sequence Viewer

Length: 2166 bp
ATGATCTTTAAACGGCCTCAGGGATATGAAGCTACACTATCACTTGGAATCCAGTTATGGACCGAAGCTTCCAATAAACTGAGCTCCTTCCTGTACACTAACACTCGTTACTCTTTTCAAGCCTGTGTTTCCTACCTGAAGTTGTTAGTTTCATCTTTGCCACCCAGAGAGAGGCAGTCAGAGTCAGAGATGGGGCTAGAAATTATGGAGCCAAATACTTGCATTAGAGGTTGCTGCCACAGCAATTCCATTCCTCTACATCTTCCATCTTCCTCTTACACTATCCTCAAACCTATTGCTCGAGGGGCAGAGAGTGTTGTATATGAAGCAGTTTTGGATGGAAAGAAAGTTGCTGTAAAGAAACCCATCTTGTCTACTTCTGAAGACATTGATAAGTTCCACAAGGAGTTACAATTGTTATGTAAATTGCATCATCCCAGATTGGCAAAACTGGTAGCTGCACATGCAAAGCCACCCAACTACATGTATTTCTTTGAATATTTTGAACCTCCCAATTTATCCGAGAAATTACACGCGGAAGAATGGAGTCCGAGTATCAATCAGGTGCTCATGATTGCTGTCCATTTAGCATCAGCTTTGCAATATCTGCATAACCTTGGGATTGTCCATAGGGATGTGAAACCGGCAAATATTCTTCTTGACAAAGATCTTTGTCCACACTTAGCAGACTTTGGTTTGGCGGAATACAAGGAAGATCTTAAAGGAGTTTCTGTTGAAAACTGGAAGTCATTGGGCAAGCCTACTGGTGGTTTTCACAAAAGAAATATGGTTGGCACCCTATTGTATATGGCACCTGAGTTACTAAAGAAGGAAGTACATACAGAAAAATCAGATGTTTACAGTTTTGGTATAGCAATCAATGAGCTTCTTACTGGTGTTGTTCCATATACTGATCTTCGTGCAGAAGCGCAGGCACACACTGTGCTAGAGATGAACTACACCGAGCAGAAACTTACAGCAGCTGTGGTGTCTGATGGTTTGCGACCGGTTCTTGCTGGTCCTGAGTCTGGTGTACCATCAACTTTAATATCACTGATAGAGAGGTGTTGGGATGCAACTTCTCAAAACAGACCTTCGTTTGATGCCATAGTTGCAGAACTTGGTACAATTTTGGAACATAGAAAGAGAATAAAGGAACCTGCTATTGCCGATGGCGAAGCTCATAATTCTGTTGGTGATCAGCACGCAGATGCTGCAAACAACTATCATGTTTATCAAGAAGGTGTTGATTGGTATAGCCGGGCAGAAAAATTCACCAAAAGAGCTCATGAAACTAAATCTGTTACGACCGTCTGGCTCGATGCTTCAAATGATCCTTTGGCATACCGTCCAGTTCTTTCATGGGGATCCTTTGCTACATGTGGGAGAAGGGAGACCATGGAGGATACACATTTCCTGTTGCCCCATATGGATAATGAAGAGGATATCCATTTTTTTGGAATTTTTGATGGTCATAGAGGTGCAGCCGCTGCCGAATTTTCTGCTCGAGCTTTGCCAAGATTCTTGCAAGCTGTAAGTTCTATTAGCAGTCCAACTGATGCTTTAGTGGAAGCATTCATCAAGACAGATGTTGCATTTAGAGATGAACTTGATTTTTGTCGTAAATCCAAGAGAGTCATCCAGAAGGATTGGCATCCTGGTTGCACTGCAGCTGCTGCTCTTATTGTTAAAAACAAGCTTTTTGTAGCCAATGCTGGTGATTGCAGGACGATATTGTGTCGGGCTGGCATCCCTGTTCTCCTAAGCAAGGATCACATTGCAAGCTGTCTTGAGGAGAGAAAGCGGGTTATTAATGCAGGAGGACAAGTAAAATGGCAAGTCGATGATTGGCGGGTTGGCCTAGCTGCTCTTCAGGTCACTCGTTCCATAGGTGATGATGATCTAAAGCCTGCTGTAACTGCAGAACCTGAGATAAGTGAGACTATTCTATCTGCAGAAGATGAGTATTTGGTTATGGCAAGTGATGGACTGTGGGATGTCATGAGCAATGCAGAGGTTATAAGCATAATCAAGGACACTGTGAAAGAGCCTGGAATGTGCTCTAAGCGATTGGCAACAGAAGCTGCTGAGCGTGGCAGCAAAGACAACATAACAGTCATTGTTGTCTTCCTTCGTCTTGTATCCACCGCTGAGAGAATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001172 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0003968 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007275 GO:0008037 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009856 GO:0009875 GO:0009888 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010074 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0032501 GO:0032502 GO:0032774 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0044706 GO:0045087 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048519 GO:0048544 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0097747 GO:0098542 GO:0098586 GO:0098727 GO:0099402 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

721

Amino Acids

80.23

Weight (kDa)

6.0

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 93 - 372 3.7e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 95 - 374 4.7e-40 Protein tyrosine and serine/threonine kinase
PP2C PF00481 457 - 704 4.3e-67 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2021
Acc36I ACCTGC 1 cut(s) 1168
AccB1I GGYRCC 2 cut(s) 794, 811
AccI GTMKAC 1 cut(s) 374
AccII CGCG 1 cut(s) 536
AciI CCGC 6 cut(s) 536, 701, 1488, 1804, 1852, 2148
AclWI GGATC 4 cut(s) 1328, 1362, 1375, 1779
AcsI RAATTY 4 cut(s) 1271, 1461, 1496, 2157
AcuI CTGAAG 3 cut(s) 158, 402, 1856
AdeI CACNNNGTG 1 cut(s) 943
AfaI GTAC 4 cut(s) 95, 837, 1035, 1126
AfiI CCNNNNNNNGG 4 cut(s) 171, 767, 1028, 1768
AflIII ACRYGT 2 cut(s) 483, 1379
AgeI ACCGGT 1 cut(s) 1006
AgsI TTSAA 5 cut(s) 119, 497, 506, 737, 1329
AjnI CCWGG 2 cut(s) 1657, 2050
Alw21I GWGCWC 4 cut(s) 86, 570, 1288, 2063
Alw26I GTCTC 2 cut(s) 1388, 1934
AlwI GGATC 4 cut(s) 1328, 1362, 1375, 1779
AlwNI CAGNNNCTG 6 cut(s) 983, 1214, 1490, 1676, 1928, 2084
Ama87I CYCGRG 2 cut(s) 300, 1506
AoxI GGCC 2 cut(s) 14, 1858
ApoI RAATTY 4 cut(s) 1271, 1461, 1496, 2157
AseI ATTAAT 1 cut(s) 1812
AsiGI ACCGGT 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 931
AspS9I GGNCC 2 cut(s) 60, 1019
AsuC2I CCSGG 1 cut(s) 1262
AsuHPI GGTGA 4 cut(s) 1208, 1267, 1730, 1904
AvaI CYCGRG 2 cut(s) 300, 1506
AvaII GGWCC 2 cut(s) 60, 1019
AxyI CCTNAGG 1 cut(s) 18
BamHI GGATCC 1 cut(s) 1367
BanI GGYRCC 2 cut(s) 794, 811
BanII GRGCYC 2 cut(s) 86, 1288
BbsI GAAGAC 2 cut(s) 390, 2119
Bbv12I GWGCWC 4 cut(s) 86, 570, 1288, 2063
BccI CCATC 9 cut(s) 184, 274, 332, 374, 989, 1045, 1166, 1463, 1979
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 1484, 1518
BciT130I CCWGG 2 cut(s) 1659, 2052
BciVI GTATCC 2 cut(s) 1399, 2152
BclI TGATCA 1 cut(s) 1198
BcnI CCSGG 1 cut(s) 1262
BcoDI GTCTC 2 cut(s) 1388, 1934
BfaI CTAG 4 cut(s) 197, 947, 1862, 2164
BfmI CTRYAG 3 cut(s) 1668, 1920, 1953
BfuAI ACCTGC 1 cut(s) 1168
BfuI GTATCC 2 cut(s) 1399, 2152
BglII AGATCT 2 cut(s) 667, 715
BlpI GCTNAGC 1 cut(s) 2088
Bme1390I CCNGG 3 cut(s) 1262, 1659, 2052
Bme18I GGWCC 2 cut(s) 60, 1019
BmeT110I CYCGRG 2 cut(s) 300, 1506
BmgT120I GGNCC 2 cut(s) 60, 1019
BmiI GGNNCC 5 cut(s) 210, 796, 813, 1158, 1369
BmrFI CCNGG 3 cut(s) 1262, 1659, 2052
BmsI GCATC 9 cut(s) 439, 599, 1063, 1093, 1201, 1312, 1549, 1663, 1758
BpiI GAAGAC 2 cut(s) 390, 2119
Bpu10I CCTNAGC 1 cut(s) 1763
Bpu1102I GCTNAGC 1 cut(s) 2088
BpuEI CTTGAG 1 cut(s) 1811
BpuMI CCSGG 1 cut(s) 1262
BsaBI GATNNNNATC 2 cut(s) 1653, 1899
BsaI GGTCTC 1 cut(s) 1388
BsaJI CCNNGG 2 cut(s) 616, 1398
BsaWI WCCGGW 1 cut(s) 1006
BsaXI ACNNNNNCTCC 6 cut(s) 538, 568, 717, 747, 1812, 1842
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 767, 1028, 1768
Bse118I RCCGGY 2 cut(s) 643, 1006
Bse1I ACTGG 6 cut(s) 52, 456, 746, 769, 898, 1352
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 2 cut(s) 1776, 2014
Bse8I GATNNNNATC 2 cut(s) 1653, 1899
BseBI CCWGG 2 cut(s) 1659, 2052
BseDI CCNNGG 2 cut(s) 616, 1398
BseGI GGATG 8 cut(s) 343, 433, 640, 1078, 1638, 1654, 1749, 2002
BseJI GATNNNNATC 2 cut(s) 1653, 1899
BseLI CCNNNNNNNGG 4 cut(s) 171, 767, 1028, 1768
BseMI GCAATG 2 cut(s) 1776, 2014
BseMII CTCAG 7 cut(s) 32, 71, 807, 1014, 1920, 2079, 2142
BseNI ACTGG 6 cut(s) 52, 456, 746, 769, 898, 1352
BseRI GAGGAG 1 cut(s) 1808
BsgI GTGCAG 3 cut(s) 444, 942, 1503
Bsh1236I CGCG 1 cut(s) 536
Bsh1285I CGRYCG 2 cut(s) 1007, 1311
BshFI GGCC 2 cut(s) 16, 1860
BshNI GGYRCC 2 cut(s) 794, 811
BshTI ACCGGT 1 cut(s) 1006
BsiEI CGRYCG 2 cut(s) 1007, 1311
BsiHKAI GWGCWC 4 cut(s) 86, 570, 1288, 2063
BsiHKCI CYCGRG 2 cut(s) 300, 1506
BsiSI CCGG 3 cut(s) 644, 1007, 1261
BslI CCNNNNNNNGG 4 cut(s) 171, 767, 1028, 1768
BsmAI GTCTC 2 cut(s) 1388, 1934
BsmI GAATGC 1 cut(s) 1574
BsnI GGCC 2 cut(s) 16, 1860
Bso31I GGTCTC 1 cut(s) 1388
BsoBI CYCGRG 2 cut(s) 300, 1506
Bsp1286I GDGCHC 4 cut(s) 86, 570, 1288, 2063
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
Bsp1720I GCTNAGC 1 cut(s) 2088
Bsp19I CCATGG 1 cut(s) 1398
BspACI CCGC 6 cut(s) 536, 701, 1488, 1804, 1852, 2148
BspANI GGCC 2 cut(s) 16, 1860
BspCNI CTCAG 7 cut(s) 31, 72, 808, 1015, 1921, 2080, 2143
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 3 cut(s) 570, 1288, 2001
BspLI GGNNCC 5 cut(s) 210, 796, 813, 1158, 1369
BspMAI CTGCAG 3 cut(s) 1672, 1924, 1957
BspMI ACCTGC 1 cut(s) 1168
BspPI GGATC 4 cut(s) 1328, 1362, 1375, 1779
BspQI GCTCTTC 1 cut(s) 1875
BspT107I GGYRCC 2 cut(s) 794, 811
BspTNI GGTCTC 1 cut(s) 1388
BsrDI GCAATG 2 cut(s) 1776, 2014
BsrFI RCCGGY 2 cut(s) 643, 1006
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 6 cut(s) 52, 456, 746, 769, 898, 1352
BssAI RCCGGY 2 cut(s) 643, 1006
BssECI CCNNGG 2 cut(s) 616, 1398
BssMI GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
BssT1I CCWWGG 2 cut(s) 616, 1398
Bst2UI CCWGG 2 cut(s) 1659, 2052
Bst4CI ACNGT 7 cut(s) 863, 943, 1312, 1349, 1992, 2041, 2116
Bst6I CTCTTC 2 cut(s) 1434, 1875
BstAPI GCANNNNNTGC 4 cut(s) 607, 1214, 1490, 1676
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 7 cut(s) 758, 933, 1206, 1530, 1747, 1783, 1911
BstDSI CCRYGG 1 cut(s) 1398
BstENI CCTNNNNNAGG 1 cut(s) 1766
BstF5I GGATG 8 cut(s) 343, 433, 640, 1078, 1638, 1654, 1749, 2002
BstFNI CGCG 1 cut(s) 536
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 9 cut(s) 6, 670, 718, 916, 1201, 1336, 1370, 1774, 1903
BstMAI GTCTC 2 cut(s) 1388, 1934
BstMBI GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
BstMCI CGRYCG 2 cut(s) 1007, 1311
BstNI CCWGG 2 cut(s) 1659, 2052
BstNSI RCATGY 3 cut(s) 467, 487, 1383
BstSCI CCNGG 3 cut(s) 1260, 1657, 2050
BstSFI CTRYAG 3 cut(s) 1668, 1920, 1953
BstUI CGCG 1 cut(s) 536
BstV2I GAAGAC 2 cut(s) 390, 2119
BstX2I RGATCY 3 cut(s) 667, 715, 1367
BstXI CCANNNNNNTGG 1 cut(s) 1457
BstYI RGATCY 3 cut(s) 667, 715, 1367
Bsu36I CCTNAGG 1 cut(s) 18
BsuI GTATCC 2 cut(s) 1399, 2152
BsuRI GGCC 2 cut(s) 16, 1860
BtgI CCRYGG 1 cut(s) 1398
BtsCI GGATG 8 cut(s) 343, 433, 640, 1078, 1638, 1654, 1749, 2002
BtsI GCAGTG 1 cut(s) 1665
BtsIMutI CAGTG 4 cut(s) 939, 1052, 1665, 2037
BveI ACCTGC 1 cut(s) 1168
Cac8I GCNNGC 7 cut(s) 758, 933, 1206, 1530, 1747, 1783, 1911
CaiI CAGNNNCTG 6 cut(s) 983, 1214, 1490, 1676, 1928, 2084
CciI TCATGA 3 cut(s) 570, 1288, 2001
CfoI GCGC 1 cut(s) 931
Cfr10I RCCGGY 2 cut(s) 643, 1006
Cfr13I GGNCC 2 cut(s) 60, 1019
Csp6I GTAC 4 cut(s) 94, 836, 1034, 1125
CspAI ACCGGT 1 cut(s) 1006
CviAII CATG 9 cut(s) 464, 484, 571, 1229, 1289, 1362, 1380, 1399, 2002
CviQI GTAC 4 cut(s) 94, 836, 1034, 1125
DpnI GATC 9 cut(s) 5, 669, 717, 915, 1200, 1335, 1369, 1773, 1902
DpnII GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
DraI TTTAAA 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 943
Eam1104I CTCTTC 2 cut(s) 1434, 1875
EarI CTCTTC 2 cut(s) 1434, 1875
EciI GGCGGA 1 cut(s) 716
Ecl136II GAGCTC 2 cut(s) 84, 1286
Eco130I CCWWGG 2 cut(s) 616, 1398
Eco24I GRGCYC 2 cut(s) 86, 1288
Eco31I GGTCTC 1 cut(s) 1388
Eco32I GATATC 1 cut(s) 1447
Eco47I GGWCC 2 cut(s) 60, 1019
Eco53kI GAGCTC 2 cut(s) 84, 1286
Eco57I CTGAAG 3 cut(s) 158, 402, 1856
Eco81I CCTNAGG 1 cut(s) 18
Eco88I CYCGRG 2 cut(s) 300, 1506
EcoICRI GAGCTC 2 cut(s) 84, 1286
EcoNI CCTNNNNNAGG 1 cut(s) 1766
EcoRII CCWGG 2 cut(s) 1657, 2050
EcoRV GATATC 1 cut(s) 1447
EcoT14I CCWWGG 2 cut(s) 616, 1398
EcoT38I GRGCYC 2 cut(s) 86, 1288
ErhI CCWWGG 2 cut(s) 616, 1398
FaeI CATG 9 cut(s) 467, 487, 574, 1232, 1292, 1365, 1383, 1402, 2005
FatI CATG 9 cut(s) 463, 483, 570, 1228, 1288, 1361, 1379, 1398, 2001
FauI CCCGC 2 cut(s) 1797, 1845
FauNDI CATATG 1 cut(s) 1428
FbaI TGATCA 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 374
FokI GGATG 8 cut(s) 350, 420, 647, 1085, 1625, 1641, 1736, 2009
FriOI GRGCYC 2 cut(s) 86, 1288
FspBI CTAG 4 cut(s) 197, 947, 1862, 2164
GlaI GCGC 1 cut(s) 930
HaeIII GGCC 2 cut(s) 16, 1860
HapII CCGG 3 cut(s) 644, 1007, 1261
HhaI GCGC 1 cut(s) 931
Hin1II CATG 9 cut(s) 467, 487, 574, 1232, 1292, 1365, 1383, 1402, 2005
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HindIII AAGCTT 2 cut(s) 66, 1697
HinfI GANTC 6 cut(s) 48, 182, 547, 1025, 1521, 1635
HpaII CCGG 3 cut(s) 644, 1007, 1261
HphI GGTGA 4 cut(s) 1208, 1267, 1730, 1904
Hpy166II GTNNAC 5 cut(s) 96, 375, 677, 859, 1034
Hpy188I TCNGA 7 cut(s) 181, 187, 382, 523, 552, 853, 994
Hpy188III TCNNGA 9 cut(s) 571, 659, 1022, 1238, 1289, 1582, 1642, 1790, 2002
Hpy8I GTNNAC 5 cut(s) 96, 375, 677, 859, 1034
HpyAV CCTTC 7 cut(s) 97, 823, 1104, 1235, 1383, 1639, 2141
HpyCH4III ACNGT 7 cut(s) 863, 943, 1312, 1349, 1992, 2041, 2116
Hsp92II CATG 9 cut(s) 467, 487, 574, 1232, 1292, 1365, 1383, 1402, 2005
HspAI GCGC 1 cut(s) 929
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
LguI GCTCTTC 1 cut(s) 1875
LmnI GCTCC 2 cut(s) 89, 208
LweI GCATC 9 cut(s) 439, 599, 1063, 1093, 1201, 1312, 1549, 1663, 1758
MaeI CTAG 4 cut(s) 197, 947, 1862, 2164
MaeIII GTNAC 6 cut(s) 107, 408, 819, 1303, 1876, 1915
MalI GATC 9 cut(s) 5, 669, 717, 915, 1200, 1335, 1369, 1773, 1902
MboI GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 3 cut(s) 667, 715, 1367
MhlI GDGCHC 4 cut(s) 86, 570, 1288, 2063
MlyI GAGTC 4 cut(s) 191, 556, 1034, 1644
MmeI TCCRAC 1 cut(s) 1577
MseI TTAA 5 cut(s) 9, 720, 1046, 1689, 1812
MslI CAYNNNNRTG 3 cut(s) 633, 1209, 1479
MspA1I CMGCKG 4 cut(s) 983, 1490, 1673, 2150
MspI CCGG 3 cut(s) 644, 1007, 1261
MspR9I CCNGG 3 cut(s) 1262, 1659, 2052
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 1574
MvaI CCWGG 2 cut(s) 1659, 2052
MvnI CGCG 1 cut(s) 536
NciI CCSGG 1 cut(s) 1262
NcoI CCATGG 1 cut(s) 1398
NdeI CATATG 1 cut(s) 1428
NdeII GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
NlaIII CATG 9 cut(s) 467, 487, 574, 1232, 1292, 1365, 1383, 1402, 2005
NlaIV GGNNCC 5 cut(s) 210, 796, 813, 1158, 1369
NmuCI GTSAC 1 cut(s) 1876
NspI RCATGY 3 cut(s) 467, 487, 1383
PaeR7I CTCGAG 2 cut(s) 300, 1506
PagI TCATGA 3 cut(s) 570, 1288, 2001
PciI ACATGT 2 cut(s) 483, 1379
PciSI GCTCTTC 1 cut(s) 1875
PctI GAATGC 1 cut(s) 1574
PfeI GAWTC 2 cut(s) 48, 1521
PinAI ACCGGT 1 cut(s) 1006
PleI GAGTC 4 cut(s) 190, 555, 1033, 1643
PpsI GAGTC 4 cut(s) 190, 555, 1033, 1643
PscI ACATGT 2 cut(s) 483, 1379
PshBI ATTAAT 1 cut(s) 1812
PsiI TTATAA 1 cut(s) 2021
Psp124BI GAGCTC 2 cut(s) 86, 1288
Psp6I CCWGG 2 cut(s) 1657, 2050
PspGI CCWGG 2 cut(s) 1657, 2050
PspN4I GGNNCC 5 cut(s) 210, 796, 813, 1158, 1369
PspPI GGNCC 2 cut(s) 60, 1019
PspXI VCTCGAGB 2 cut(s) 300, 1506
PstI CTGCAG 3 cut(s) 1672, 1924, 1957
PstNI CAGNNNCTG 6 cut(s) 983, 1214, 1490, 1676, 1928, 2084
PsuI RGATCY 3 cut(s) 667, 715, 1367
PvuII CAGCTG 2 cut(s) 983, 1673
RsaI GTAC 4 cut(s) 95, 837, 1035, 1126
RsaNI GTAC 4 cut(s) 94, 836, 1034, 1125
RseI CAYNNNNRTG 3 cut(s) 633, 1209, 1479
SacI GAGCTC 2 cut(s) 86, 1288
SapI GCTCTTC 1 cut(s) 1875
SaqAI TTAA 5 cut(s) 9, 720, 1046, 1689, 1812
Sau3AI GATC 9 cut(s) 3, 667, 715, 913, 1198, 1333, 1367, 1771, 1900
Sau96I GGNCC 2 cut(s) 60, 1019
SchI GAGTC 4 cut(s) 191, 556, 1034, 1644
ScrFI CCNGG 3 cut(s) 1262, 1659, 2052
SduI GDGCHC 4 cut(s) 86, 570, 1288, 2063
SfaNI GCATC 9 cut(s) 439, 599, 1063, 1093, 1201, 1312, 1549, 1663, 1758
SfcI CTRYAG 3 cut(s) 1668, 1920, 1953
Sfr274I CTCGAG 2 cut(s) 300, 1506
SinI GGWCC 2 cut(s) 60, 1019
SlaI CTCGAG 2 cut(s) 300, 1506
SmiMI CAYNNNNRTG 3 cut(s) 633, 1209, 1479
SmlI CTYRAG 3 cut(s) 300, 1506, 1790
SmoI CTYRAG 3 cut(s) 300, 1506, 1790
SsiI CCGC 6 cut(s) 536, 701, 1488, 1804, 1852, 2148
SspI AATATT 2 cut(s) 500, 652
SspMI CTAG 4 cut(s) 197, 947, 1862, 2164
SstI GAGCTC 2 cut(s) 86, 1288
StyD4I CCNGG 3 cut(s) 1260, 1657, 2050
StyI CCWWGG 2 cut(s) 616, 1398
TaaI ACNGT 7 cut(s) 863, 943, 1312, 1349, 1992, 2041, 2116
TaqI TCGA 4 cut(s) 301, 1320, 1507, 1842
TaqII GACCGA 1 cut(s) 77
TatI WGTACW 2 cut(s) 93, 835
TauI GCSGC 1 cut(s) 1490
TfiI GAWTC 2 cut(s) 48, 1521
Tru1I TTAA 5 cut(s) 9, 720, 1046, 1689, 1812
Tru9I TTAA 5 cut(s) 9, 720, 1046, 1689, 1812
TscAI CASTG 4 cut(s) 946, 1059, 1672, 2044
TseFI GTSAC 1 cut(s) 1876
Tsp45I GTSAC 1 cut(s) 1876
TspDTI ATGAA 9 cut(s) 42, 141, 339, 968, 1305, 1350, 1452, 1567, 1620
TspRI CASTG 4 cut(s) 946, 1059, 1672, 2044
VpaK11BI GGWCC 2 cut(s) 60, 1019
VspI ATTAAT 1 cut(s) 1812
XagI CCTNNNNNAGG 1 cut(s) 1766
XapI RAATTY 4 cut(s) 1271, 1461, 1496, 2157
XceI RCATGY 3 cut(s) 467, 487, 1383
XcmI CCANNNNNNNNNTGG 1 cut(s) 1359
XhoI CTCGAG 2 cut(s) 300, 1506
XmiI GTMKAC 1 cut(s) 374
XspI CTAG 4 cut(s) 197, 947, 1862, 2164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.