Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012916

Physical Location & Seq

Genomic Coordinates Reverse (-)

9047428 .. 9050194

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1124700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGTTCTCGAAGAGCCTCGGCATCCTGATCGAGGAGGCCTTGCCGGAATGGCGGGACAAGTTTCTGTCGTACAAGGACTTGAAGAAGCAGCTGAAGCTGATCTACCCCAAAGACGGAGACAAGCCTCCCAATAAACGGCCTAGATTGTCTGACGACGACGACGATCGTGCTGACGGCGAGGGCGGTGAGGTTTCCAAGGAGGTAACGGATTTCGTGAGGTTGTTGGAGAACGAATTGGAAAAGTTTAATGCTTTTTTTGAGGAGAAGGAGGAAGATTACGTTATTCGATGGAAGGAGCTGCAAGACAGGGTAGCGGACGCAAAGGATTCAAATGAAGAGTTGATGAATGTAGGGAGAGAGATAGTTGATTTTCATGGAGAGATGGTTTTGTTAGAAAATTACAGCGCCCTTAACTATACAGGACTATTGAAGATACTAAAGAAACATGACAAGCGAACTGGTGCTCTAATTCGCCTTCCTTTTGTCCAAAGGGTCATGCAACAACCATTCTTCACTACTGATGTACTAAACAAGCTTGTAAAGGAGTGCGAGGTGATGCTCGATCATGTTTTCTCCAAGAATGACCCATCAGCCCCATCTGAAGCAACCAAAGTGGAAGAACGGTGCGAGTCTACGGCTGTGACTGAAAATAGAGATAGGATATTTAAAGCGCCCACAGAACTTGCAGAAATAAAACAGATGGAGAGCGTCTATGTGAAGCAAACTGTGTCAGCATTGCGTGTCTTGAAAGAGGTACGGAGTGGAAGCTCAACTGTGAGTGCCTTCTCATTGCCCCCTTTGCAAATGAATGTGATGGAAGAGGATTTGAAGAATATGCCTGTTTTAGAACAAGTAGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

289

Amino Acids

33.2

Weight (kDa)

5.13

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 46	2.5e-07	SPX domain
SPX	PF03105	120 - 165	3.8e-08	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29180
malus_domestica	MD15G1124700.v1.1
prunus_persica	Prupe.1G480200_v2.0.a1 Prupe.1G480200_v2.0.a1
pyrus_communis	pycom15g11230
rosa_chinensis	RchiOBHm_Chr6g0298031
rosa_laevigata	RLG00000011541
rosa_multiflora	Rmu_co8108290.1_g000001 Rmu_sc0002800.1_g000017 Rmu_sc0035242.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169990 Rroxscaffold_7G00178820
rosa_rugosa	Rorug06G0278100
rosa_samantha	Rh6AG388500 Rh6BG396700 Rh6CG402700 Rh6DG389200
rosa_wichuraiana	Rw6G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	635
AciI	CCGC	3 cut(s)	55, 186, 317
AcuI	CTGAAG	2 cut(s)	116, 624
AfaI	GTAC	3 cut(s)	74, 528, 759
AfiI	CCNNNNNNNGG	3 cut(s)	34, 116, 138
AgsI	TTSAA	5 cut(s)	85, 333, 433, 751, 832
AluBI	AGCT	5 cut(s)	94, 100, 301, 538, 771
AluI	AGCT	5 cut(s)	94, 100, 301, 538, 771
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	39, 140
ApeKI	GCWGC	2 cut(s)	91, 301
AspLEI	GCGC	2 cut(s)	410, 676
AsuHPI	GGTGA	2 cut(s)	200, 568
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	103, 288
BccI	CCATC	6 cut(s)	285, 379, 598, 607, 697, 811
BceAI	ACGGC	3 cut(s)	155, 193, 654
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 152, 186
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	2 cut(s)	411, 677
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	92, 302
BlsI	GCNGC	2 cut(s)	93, 303
BmsI	GCATC	2 cut(s)	33, 549
BsaJI	CCNNGG	2 cut(s)	19, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 116, 138
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	737, 791
BseDI	CCNNGG	2 cut(s)	19, 198
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	34, 116, 138
BseMI	GCAATG	2 cut(s)	737, 791
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	50, 278
BseXI	GCAGC	2 cut(s)	103, 288
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	41, 142
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	34, 116, 138
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	41, 142
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	30, 102, 166, 565
BspACI	CCGC	3 cut(s)	55, 186, 317
BspANI	GGCC	2 cut(s)	41, 142
BspQI	GCTCTTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	737, 791
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	19, 198
BssMI	GATC	4 cut(s)	30, 102, 166, 565
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	627, 730, 778
Bst6I	CTCTTC	3 cut(s)	8, 333, 816
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	24
BstH2I	RGCGCY	2 cut(s)	411, 677
BstHHI	GCGC	2 cut(s)	410, 676
BstKTI	GATC	4 cut(s)	33, 105, 169, 568
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	30, 102, 166, 565
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 97, 802
BstV1I	GCAGC	2 cut(s)	103, 288
BsuRI	GGCC	2 cut(s)	41, 142
BtsCI	GGATG	1 cut(s)	24
CfoI	GCGC	2 cut(s)	410, 676
CseI	GACGC	2 cut(s)	329, 700
Csp6I	GTAC	3 cut(s)	73, 527, 758
CspCI	CAANNNNNGTGG	4 cut(s)	597, 632, 667, 702
CviAII	CATG	4 cut(s)	377, 449, 499, 569
CviQI	GTAC	3 cut(s)	73, 527, 758
DpnI	GATC	4 cut(s)	32, 104, 168, 567
DpnII	GATC	4 cut(s)	30, 102, 166, 565
DraI	TTTAAA	1 cut(s)	670
Eam1104I	CTCTTC	3 cut(s)	8, 333, 816
EarI	CTCTTC	3 cut(s)	8, 333, 816
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	116, 624
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	4 cut(s)	380, 452, 502, 572
FaiI	YATR	7 cut(s)	378, 420, 450, 500, 570, 717, 839
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	376, 448, 498, 568
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	2 cut(s)	92, 302
FokI	GGATG	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	92, 302
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	409, 675
GluI	GCNGC	2 cut(s)	92, 302
HaeII	RGCGCY	2 cut(s)	411, 677
HaeIII	GGCC	2 cut(s)	41, 142
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	2 cut(s)	329, 700
HhaI	GCGC	2 cut(s)	410, 676
Hin1II	CATG	4 cut(s)	380, 452, 502, 572
Hin6I	GCGC	2 cut(s)	408, 674
HinP1I	GCGC	2 cut(s)	408, 674
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	329, 632
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	200, 568
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	2 cut(s)	154, 604
Hpy188III	TCNNGA	4 cut(s)	10, 28, 217, 748
Hpy8I	GTNNAC	1 cut(s)	636
Hpy99I	CGWCG	3 cut(s)	161, 164, 167
HpyAV	CCTTC	4 cut(s)	262, 289, 488, 796
HpyCH4III	ACNGT	3 cut(s)	627, 730, 778
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	304, 502, 689, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 97, 802
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	380, 452, 502, 572
HspAI	GCGC	2 cut(s)	408, 674
Kzo9I	GATC	4 cut(s)	30, 102, 166, 565
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	41, 60, 295, 408, 447, 855
Lsp1109I	GCAGC	2 cut(s)	103, 288
LweI	GCATC	2 cut(s)	33, 549
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	205, 643
MalI	GATC	4 cut(s)	32, 104, 168, 567
MboI	GATC	4 cut(s)	30, 102, 166, 565
MboII	GAAGA	9 cut(s)	25, 97, 287, 350, 445, 505, 632, 833, 844
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	3 cut(s)	236, 400, 471
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	207
MseI	TTAA	3 cut(s)	249, 414, 669
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	52, 97, 802
NdeII	GATC	4 cut(s)	30, 102, 166, 565
NlaIII	CATG	4 cut(s)	380, 452, 502, 572
NmuCI	GTSAC	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	93, 303
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	3 cut(s)	74, 528, 759
RsaNI	GTAC	3 cut(s)	73, 527, 758
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	249, 414, 669
SatI	GCNGC	2 cut(s)	92, 302
Sau3AI	GATC	4 cut(s)	30, 102, 166, 565
SchI	GAGTC	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	2 cut(s)	33, 549
Sse9I	AATT	3 cut(s)	236, 400, 471
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	3 cut(s)	55, 186, 317
SspMI	CTAG	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	627, 730, 778
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	11, 33, 289, 564
TasI	AATT	3 cut(s)	236, 400, 471
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	249, 414, 669
Tru9I	TTAA	3 cut(s)	249, 414, 669
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	91, 301
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	5 cut(s)	17, 351, 362, 365, 824
TspGWI	ACGGA	3 cut(s)	132, 224, 775
XagI	CCTNNNNNAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	635
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.