Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012916

Physical Location & Seq

Genomic Coordinates Reverse (-)

40117148 .. 40119500

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G480200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAGTTCTCAAAGAGCCTCGGCATCCTGATCGAGGAGGCCTTACCAGAATGGCGGGACAAGTTTTTATCGTACAAGGACTTGAAGAAGCAGCTGAAGCTGATCTATCCCAAAGACGGAGACAAGCCTCCCAATAAACGGCCCAGATTGGCCGACGACGACGACCGTACGGACGGTGGAGATATCGCCGGCGAGGGCGGCGAAGGTGCTGAGGTTTCCAAGGAGGTCACCGATTTTGTGAGGTTGTTAGAGAACGAAATGGAAAAGTTCAATGTTTTTTTTGAGGAGAAAGAGGAAGAGTATGTTATTAGATGGAAGGAGCTGCAAGACAGGGTAGCAGAAGCGAAGGATTCGGCTGAGGAGTTGATGAAAGTAGGAAGAGAAATAGTGGATTTTCATGGAGAGATGGTTTTGTTAGAGAATTACAGTGCCCTCAACTATACAGGACTTTTGAAGATACTAAAGAAGCATGACAAGCGAACTGGTGCTCTAATTCGCTTTCCCTTTGTCCAAAGGGTCATGCAACAGCCATTCTTCACAACTGATGTACTGAACAAGCTTGTGAAGGAGTGTGAGGCAATGCTTGATCATGTTTTCTCGAAGAATGGCCCATCAGTCCCATCTGAAGCAACCGAAGTGGAAGAACGGTGTGAGTCTACGACTGTGACTGAAAATAGAGACAGGCTATTTAGAGCTCCTACAGAACTTGCAGAAATAAAGCATATGGAGAGCGTGTATGTGAGACAAACTATATCGGCATTGCGTGTCTTGAAAGAAGTTCGGAGTGGAAGCTCAACCGTCAGTGCCTTCTCATTGCCCCCTTTGCAAACCAATGTGGTAGAGGAGGATTTGAAGAATATACCTATTTTAGAACAGGCGGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

296

Amino Acids

33.8

Weight (kDa)

5.15

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29180
malus_domestica	MD15G1124700.v1.1
prunus_persica	Prupe.1G480200_v2.0.a1 Prupe.1G480200_v2.0.a1
pyrus_communis	pycom15g11230
rosa_chinensis	RchiOBHm_Chr6g0298031
rosa_laevigata	RLG00000011541
rosa_multiflora	Rmu_co8108290.1_g000001 Rmu_sc0002800.1_g000017 Rmu_sc0035242.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169990 Rroxscaffold_7G00178820
rosa_rugosa	Rorug06G0278100
rosa_samantha	Rh6AG388500 Rh6BG396700 Rh6CG402700 Rh6DG389200
rosa_wichuraiana	Rw6G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	656
AciI	CCGC	3 cut(s)	55, 198, 878
AcoI	YGGCCR	2 cut(s)	150, 879
AcuI	CTGAAG	2 cut(s)	116, 645
AfaI	GTAC	3 cut(s)	74, 169, 549
AfiI	CCNNNNNNNGG	3 cut(s)	34, 116, 138
AgsI	TTSAA	5 cut(s)	85, 271, 454, 772, 853
AluBI	AGCT	6 cut(s)	94, 100, 322, 559, 695, 792
AluI	AGCT	6 cut(s)	94, 100, 322, 559, 695, 792
Alw21I	GWGCWC	2 cut(s)	490, 697
Alw26I	GTCTC	3 cut(s)	114, 672, 736
AoxI	GGCC	5 cut(s)	39, 140, 150, 607, 879
ApeKI	GCWGC	2 cut(s)	91, 322
AspS9I	GGNCC	2 cut(s)	141, 608
AsuHPI	GGTGA	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	490, 697
BbvCI	CCTCAGC	2 cut(s)	210, 357
BbvI	GCAGC	2 cut(s)	103, 309
BccI	CCATC	4 cut(s)	306, 400, 619, 628
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	3 cut(s)	114, 672, 736
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	4 cut(s)	92, 199, 323, 879
BlsI	GCNGC	4 cut(s)	93, 200, 324, 880
BmgT120I	GGNCC	2 cut(s)	141, 608
BmsI	GCATC	1 cut(s)	33
Bpu10I	CCTNAGC	2 cut(s)	210, 357
BsaJI	CCNNGG	2 cut(s)	19, 219
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 719, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 116, 138
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	3 cut(s)	585, 758, 812
BseDI	CCNNGG	2 cut(s)	19, 219
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	34, 116, 138
BseMI	GCAATG	3 cut(s)	585, 758, 812
BseMII	CTCAG	2 cut(s)	201, 348
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	4 cut(s)	50, 299, 374, 857
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	103, 309
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	5 cut(s)	41, 142, 152, 609, 881
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	490, 697
BsiSI	CCGG	1 cut(s)	189
BsiWI	CGTACG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	71, 602
BslI	CCNNNNNNNGG	3 cut(s)	34, 116, 138
BsmAI	GTCTC	3 cut(s)	114, 672, 736
BsmFI	GGGAC	2 cut(s)	71, 602
BsnI	GGCC	5 cut(s)	41, 142, 152, 609, 881
Bsp1286I	GDGCHC	3 cut(s)	433, 490, 697
Bsp143I	GATC	3 cut(s)	30, 102, 586
BspACI	CCGC	3 cut(s)	55, 198, 878
BspANI	GGCC	5 cut(s)	41, 142, 152, 609, 881
BspCNI	CTCAG	2 cut(s)	202, 349
BsrDI	GCAATG	3 cut(s)	585, 758, 812
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	19, 219
BssMI	GATC	3 cut(s)	30, 102, 586
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	6 cut(s)	167, 176, 428, 648, 664, 799
Bst6I	CTCTTC	2 cut(s)	291, 373
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	210, 357
BstEII	GGTNACC	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	33, 105, 589
BstMAI	GTCTC	3 cut(s)	114, 672, 736
BstMBI	GATC	3 cut(s)	30, 102, 586
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 198, 475, 823
BstPI	GGTNACC	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	103, 309
BsuRI	GGCC	5 cut(s)	41, 142, 152, 609, 881
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	433, 808
Cac8I	GCNNGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	141, 608
Csp6I	GTAC	3 cut(s)	73, 168, 548
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	398, 470, 520, 590
CviQI	GTAC	3 cut(s)	73, 168, 548
DdeI	CTNAG	2 cut(s)	210, 357
DpnI	GATC	3 cut(s)	32, 104, 588
DpnII	GATC	3 cut(s)	30, 102, 586
EaeI	YGGCCR	2 cut(s)	150, 879
Eam1104I	CTCTTC	2 cut(s)	291, 373
EarI	CTCTTC	2 cut(s)	291, 373
Ecl136II	GAGCTC	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	697
Eco32I	GATATC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	116, 645
Eco91I	GGTNACC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	695
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	4 cut(s)	401, 473, 523, 593
FaqI	GGGAC	2 cut(s)	71, 602
FatI	CATG	4 cut(s)	397, 469, 519, 589
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	4 cut(s)	92, 199, 323, 879
FokI	GGATG	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	4 cut(s)	92, 199, 323, 879
GluI	GCNGC	4 cut(s)	92, 199, 323, 879
HaeIII	GGCC	5 cut(s)	41, 142, 152, 609, 881
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	4 cut(s)	401, 473, 523, 593
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	2 cut(s)	350, 653
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	2 cut(s)	625, 783
Hpy188III	TCNNGA	3 cut(s)	28, 598, 769
Hpy8I	GTNNAC	1 cut(s)	657
Hpy99I	CGWCG	3 cut(s)	158, 161, 164
HpyAV	CCTTC	5 cut(s)	197, 310, 340, 559, 817
HpyCH4III	ACNGT	6 cut(s)	167, 176, 428, 648, 664, 799
HpyCH4V	TGCA	4 cut(s)	325, 523, 710, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 198, 475, 823
HpyF3I	CTNAG	2 cut(s)	210, 357
Hsp92II	CATG	4 cut(s)	401, 473, 523, 593
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	30, 102, 586
LmnI	GCTCC	2 cut(s)	319, 700
LpnPI	CCDG	9 cut(s)	41, 60, 157, 202, 316, 429, 468, 667, 860
Lsp1109I	GCAGC	2 cut(s)	103, 309
LweI	GCATC	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	226, 664
MalI	GATC	3 cut(s)	32, 104, 588
MboI	GATC	3 cut(s)	30, 102, 586
MboII	GAAGA	8 cut(s)	97, 308, 390, 466, 526, 613, 653, 865
MhlI	GDGCHC	3 cut(s)	433, 490, 697
MluCI	AATT	2 cut(s)	421, 492
MlyI	GAGTC	1 cut(s)	662
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	97, 198, 475, 823
NaeI	GCCGGC	1 cut(s)	190
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	3 cut(s)	30, 102, 586
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	4 cut(s)	401, 473, 523, 593
NmuCI	GTSAC	2 cut(s)	226, 664
PceI	AGGCCT	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	350
Pfl23II	CGTACG	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	93, 200, 324, 880
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	697
PspEI	GGTNACC	1 cut(s)	226
PspLI	CGTACG	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	141, 608
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	3 cut(s)	74, 169, 549
RsaNI	GTAC	3 cut(s)	73, 168, 548
SacI	GAGCTC	1 cut(s)	697
SatI	GCNGC	4 cut(s)	92, 199, 323, 879
Sau3AI	GATC	3 cut(s)	30, 102, 586
Sau96I	GGNCC	2 cut(s)	141, 608
SchI	GAGTC	1 cut(s)	662
SduI	GDGCHC	3 cut(s)	433, 490, 697
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	699
SgrAI	CRCCGGYG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	421, 492
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	3 cut(s)	55, 198, 878
SstI	GAGCTC	1 cut(s)	697
StuI	AGGCCT	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	6 cut(s)	167, 176, 428, 648, 664, 799
TaqI	TCGA	2 cut(s)	33, 599
TasI	AATT	2 cut(s)	421, 492
TatI	WGTACW	1 cut(s)	547
TauI	GCSGC	2 cut(s)	201, 881
TfiI	GAWTC	1 cut(s)	350
TscAI	CASTG	2 cut(s)	433, 808
TseFI	GTSAC	2 cut(s)	226, 664
TseI	GCWGC	2 cut(s)	91, 322
Tsp45I	GTSAC	2 cut(s)	226, 664
TspDTI	ATGAA	3 cut(s)	17, 383, 386
TspGWI	ACGGA	2 cut(s)	132, 185
TspRI	CASTG	2 cut(s)	433, 808
XagI	CCTNNNNNAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.