Rmu_sc0035242.1_g000002

SPX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035242.1
OG0012916
Physical Location & Seq
Reverse (-)
1274 .. 2132
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035242.1_g000002.1.cds

Sequence Viewer

Length: 576 bp
atgcaggaactacaggatagggtggcagaagccaaagattcaaatgaggagttgatgagagtaggcagagaaatagttgattttcatggagagatggttttgttagagaactacagtgcacttaattatacaggactattgaagattctgaagaaacatgacaagcgaaccggtgctctaattcggtttccctttgtccaaagggtcatgcaacagccattcttcagtactgatgtactcaataagctcgtgaaggagtgtgaggtgatgcttgatcacgtcttctccaggaatgacccatcaggtccatccgaagcagccaaagcagaagaacagtgcgactctgaggctgtggctgaaactagagaaattgtactgaaagctcctatagaacttgcagaaataaagcaaatggagagtgtgtacggaaagcaaactgaaaccgcattgcgtgtcttgaaggatgttcggagtggaagctcaactgttagtgcattttcactgccgcctttgcaaataaatgtggtggaggaggattcgaagaatatacatgctttacaacaagaagccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPX

Protein Analysis

191

Amino Acids

21.55

Weight (kDa)

5.14

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 444, 506
AcuI CTGAAG 2 cut(s) 170, 208
AfaI GTAC 4 cut(s) 229, 237, 375, 425
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 3 cut(s) 42, 142, 460
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 3 cut(s) 247, 383, 480
AluI AGCT 3 cut(s) 247, 383, 480
Alw21I GWGCWC 2 cut(s) 121, 178
Alw44I GTGCAC 1 cut(s) 117
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 317
AsiGI ACCGGT 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 121
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 121, 178
BbvI GCAGC 1 cut(s) 329
BccI CCATC 3 cut(s) 88, 307, 316
BciT130I CCWGG 1 cut(s) 289
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 3 cut(s) 11, 112, 387
BisI GCNGC 2 cut(s) 318, 506
BlsI GCNGC 2 cut(s) 319, 507
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 539
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 6 cut(s) 81, 111, 269, 299, 407, 437
Bse118I RCCGGY 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 308, 469
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 2 cut(s) 62, 545
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 1 cut(s) 329
BshTI ACCGGT 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 121, 178
BsiSI CCGG 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 121, 178
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 2 cut(s) 444, 506
BspCNI CTCAG 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 116, 336, 487
BstBI TTCGAA 1 cut(s) 539
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 308, 469
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 323, 511
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 3 cut(s) 11, 112, 387
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 274
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 308, 469
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 3 cut(s) 121, 341, 500
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 4 cut(s) 228, 236, 374, 424
CspAI ACCGGT 1 cut(s) 170
CviAII CATG 4 cut(s) 86, 158, 208, 551
CviJI RGCY 9 cut(s) 32, 217, 247, 320, 350, 356, 383, 480, 569
CviKI_1 RGCY 9 cut(s) 32, 217, 247, 320, 350, 356, 383, 480, 569
CviQI GTAC 4 cut(s) 228, 236, 374, 424
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 170, 208
EcoRII CCWGG 1 cut(s) 287
FaeI CATG 4 cut(s) 89, 161, 211, 554
FaiI YATR 7 cut(s) 87, 129, 159, 209, 389, 548, 552
FatI CATG 4 cut(s) 85, 157, 207, 550
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 318, 506
FokI GGATG 2 cut(s) 295, 476
Fsp4HI GCNGC 2 cut(s) 318, 506
FspBI CTAG 1 cut(s) 363
GluI GCNGC 2 cut(s) 318, 506
GsuI CTGGAG 1 cut(s) 271
HapII CCGG 1 cut(s) 171
Hin1II CATG 4 cut(s) 89, 161, 211, 554
HinfI GANTC 4 cut(s) 38, 145, 341, 536
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 119, 424
Hpy188I TCNGA 4 cut(s) 150, 313, 346, 471
Hpy188III TCNNGA 2 cut(s) 250, 457
Hpy8I GTNNAC 2 cut(s) 119, 424
HpyAV CCTTC 2 cut(s) 247, 454
HpyCH4III ACNGT 3 cut(s) 116, 336, 487
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 6 cut(s) 4, 119, 211, 398, 494, 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 511
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 4 cut(s) 89, 161, 211, 554
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 5 cut(s) 117, 184, 274, 288, 301
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 279
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 6 cut(s) 154, 163, 214, 274, 341, 553
MhlI GDGCHC 2 cut(s) 121, 178
MluCI AATT 3 cut(s) 124, 180, 369
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 5 cut(s) 40, 256, 340, 523, 526
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 323, 511
NdeII GATC 1 cut(s) 274
NlaIII CATG 4 cut(s) 89, 161, 211, 554
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 539
PfeI GAWTC 3 cut(s) 38, 145, 536
PfoI TCCNGGA 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 2 cut(s) 319, 507
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 4 cut(s) 229, 237, 375, 425
RsaNI GTAC 4 cut(s) 228, 236, 374, 424
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 318, 506
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 2 cut(s) 121, 178
SetI ASST 6 cut(s) 249, 267, 282, 307, 385, 482
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 3 cut(s) 11, 112, 387
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 1 cut(s) 305
Sse9I AATT 3 cut(s) 124, 180, 369
SsiI CCGC 2 cut(s) 444, 506
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 116, 336, 487
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 539
TasI AATT 3 cut(s) 124, 180, 369
TatI WGTACW 3 cut(s) 227, 235, 373
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 3 cut(s) 38, 145, 536
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 3 cut(s) 121, 341, 507
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 3 cut(s) 121, 341, 507
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 305
XceI RCATGY 1 cut(s) 554
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.