Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012916

Physical Location & Seq

Genomic Coordinates Forward (+)

59594067 .. 59596974

Gene Structure 2908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCGCATAACCCACTTGACGAATATTCTCATTCCACTACTATAACCTCTATCTCGATCTCCATCCATCTCTCTCTCTCTCTCTGCTTGTCACAGCCAATACGTCGTCGTTTCGTAACCGTCTATTCACCGGAAAGCTCCACATCTCGGCGCTGTTGTGTAGCCGGAATCATGAAGTTCTCGAAGAGCCTCGGCATCCTGATCGAGGAGGCCTTGCCGGAATGGCGGGACAAGTTCTTGTCCTACAAGGACTTGAAGAAGCAATTGAAGCTGATCTACCCTAAAGGCGGGGACAGGCCGCCGAGTAAACGGCCGAGATTGTCCGACGAGGATGTGCGGACGGACGGTGGGGATTTCGCCGACGACAACGGCGGTGACGTTTCCAAGGCGGTCGCCGATTTCGTGAGGTTGTTGGAGAACGAAATGGACAAGTTCAATTCGTTTTTCGAGGAGAAAGAGGAAGAGTACGTTATTAGATGGAAGGAACTACAGGATAGGGTGGCAGAAGCCAAAGATTCAAATGAGGAGTTGATGAGAGTAGGCAGAGAAATAGTTGATTTTCATGGAGAGATGGTTTTGTTAGAGAACTACAGTGCACTTAATTATACAGGACTATTGAAGATTCTGAAGAAACATGACAAGCGAACCGGTGCTCTAATTAGGTTTCCCTTTGTCCAAAGGGTCATGCAACAGCCATTCTTCAGTACTGATGTACTCAATAAGCTCGTGAAGGAGTGTGAGGTGATGCTTGATCACGTCTTCTCCAGGAATGACCCATCAGGTCCATCCGAAGCAGCCAAAGCAGAAGAACAGTTCGACTCTGAGGCTGTGGCTGAAACTAGAGAAATTGTACTGAAAGCTCCTATAGAACTTGCAGAAATAAAGCAAATGGAGAGTGTGTACGGAAAGCAAACTGAAACCGCATTGCGTGTCTTGAAGGATGTTCGGAGTGGAAGCTCAACTGTTAGTGCATTTTCACTGCCGCCTTTGCAAATAAATGTGGTGGAGGAGGATTCGAAGAACATACATGCTTTACAACAAGAAGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

350

Amino Acids

39.81

Weight (kDa)

5.49

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	58 - 108	2.6e-07	SPX domain
SPX	PF03105	182 - 226	1e-07	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29180
malus_domestica	MD15G1124700.v1.1
prunus_persica	Prupe.1G480200_v2.0.a1 Prupe.1G480200_v2.0.a1
pyrus_communis	pycom15g11230
rosa_chinensis	RchiOBHm_Chr6g0298031
rosa_laevigata	RLG00000011541
rosa_multiflora	Rmu_co8108290.1_g000001 Rmu_sc0002800.1_g000017 Rmu_sc0035242.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169990 Rroxscaffold_7G00178820
rosa_rugosa	Rorug06G0278100
rosa_samantha	Rh6AG388500 Rh6BG396700 Rh6CG402700 Rh6DG389200
rosa_wichuraiana	Rw6G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	5, 226, 288, 299, 337, 372, 389, 921, 983
AcoI	YGGCCR	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	647, 685
AfaI	GTAC	5 cut(s)	467, 706, 714, 852, 902
AfiI	CCNNNNNNNGG	3 cut(s)	147, 205, 287
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	6 cut(s)	256, 268, 436, 519, 619, 937
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	764
AluBI	AGCT	5 cut(s)	138, 271, 724, 860, 957
AluI	AGCT	5 cut(s)	138, 271, 724, 860, 957
Alw21I	GWGCWC	2 cut(s)	598, 655
Alw44I	GTGCAC	1 cut(s)	594
AoxI	GGCC	3 cut(s)	210, 296, 311
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	794
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	782
AsuHPI	GGTGA	3 cut(s)	120, 386, 754
AsuII	TTCGAA	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	782
BaeGI	GKGCMC	1 cut(s)	598
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	751
Bbv12I	GWGCWC	2 cut(s)	598, 655
BbvI	GCAGC	1 cut(s)	806
BccI	CCATC	6 cut(s)	71, 75, 471, 565, 784, 793
BceAI	ACGGC	2 cut(s)	326, 385
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	766
BclI	TGATCA	1 cut(s)	751
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	3 cut(s)	488, 589, 864
BfoI	RGCGCY	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	5, 299, 795, 983
BlsI	GCNGC	4 cut(s)	6, 300, 796, 984
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	1 cut(s)	766
Bme18I	GGWCC	1 cut(s)	782
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	782
BmrFI	CCNGG	1 cut(s)	766
BmsI	GCATC	2 cut(s)	204, 735
BpiI	GAAGAC	1 cut(s)	751
BpmI	CTGGAG	1 cut(s)	748
Bpu14I	TTCGAA	1 cut(s)	1016
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	190, 384
BsaWI	WCCGGW	2 cut(s)	130, 647
BsaXI	ACNNNNNCTCC	6 cut(s)	558, 588, 746, 776, 884, 914
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 205, 287
Bse118I	RCCGGY	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	923
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	2 cut(s)	190, 384
BseGI	GGATG	5 cut(s)	63, 195, 337, 785, 946
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	3 cut(s)	147, 205, 287
BseMI	GCAATG	1 cut(s)	923
BseMII	CTCAG	1 cut(s)	813
BseRI	GAGGAG	4 cut(s)	221, 464, 539, 1022
BseSI	GKGCMC	1 cut(s)	598
BseX3I	CGGCCG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	806
Bsh1285I	CGRYCG	2 cut(s)	314, 393
BshFI	GGCC	3 cut(s)	212, 298, 313
BshTI	ACCGGT	1 cut(s)	647
BsiEI	CGRYCG	2 cut(s)	314, 393
BsiHKAI	GWGCWC	2 cut(s)	598, 655
BsiSI	CCGG	4 cut(s)	131, 165, 218, 648
BslFI	GGGAC	2 cut(s)	242, 305
BslI	CCNNNNNNNGG	3 cut(s)	147, 205, 287
BsmFI	GGGAC	2 cut(s)	242, 305
BsnI	GGCC	3 cut(s)	212, 298, 313
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp1286I	GDGCHC	2 cut(s)	598, 655
Bsp143I	GATC	4 cut(s)	57, 201, 273, 751
BspACI	CCGC	9 cut(s)	5, 226, 288, 299, 337, 372, 389, 921, 983
BspANI	GGCC	3 cut(s)	212, 298, 313
BspCNI	CTCAG	1 cut(s)	814
BspHI	TCATGA	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	1016
BsrDI	GCAATG	1 cut(s)	923
BsrFI	RCCGGY	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	2 cut(s)	190, 384
BssMI	GATC	4 cut(s)	57, 201, 273, 751
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	5 cut(s)	121, 347, 593, 813, 964
Bst6I	CTCTTC	2 cut(s)	179, 456
BstBI	TTCGAA	1 cut(s)	1016
BstDEI	CTNAG	1 cut(s)	822
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	5 cut(s)	63, 195, 337, 785, 946
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	4 cut(s)	60, 204, 276, 754
BstMBI	GATC	4 cut(s)	57, 201, 273, 751
BstMCI	CGRYCG	2 cut(s)	314, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 268, 800, 988
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	1 cut(s)	764
BstSFI	CTRYAG	3 cut(s)	488, 589, 864
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	1 cut(s)	806
BstV2I	GAAGAC	1 cut(s)	751
BstZI	CGGCCG	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	212, 298, 313
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	5 cut(s)	63, 195, 337, 785, 946
BtsI	GCAGTG	1 cut(s)	977
BtsIMutI	CAGTG	2 cut(s)	598, 977
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	782
Csp6I	GTAC	5 cut(s)	466, 705, 713, 851, 901
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	5 cut(s)	172, 563, 635, 685, 1028
CviQI	GTAC	5 cut(s)	466, 705, 713, 851, 901
DdeI	CTNAG	1 cut(s)	822
DpnI	GATC	4 cut(s)	59, 203, 275, 753
DpnII	GATC	4 cut(s)	57, 201, 273, 751
EaeI	YGGCCR	1 cut(s)	311
EagI	CGGCCG	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	179, 456
EarI	CTCTTC	2 cut(s)	179, 456
EclXI	CGGCCG	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	782
Eco52I	CGGCCG	1 cut(s)	311
Eco57I	CTGAAG	2 cut(s)	647, 685
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	5 cut(s)	175, 566, 638, 688, 1031
FaqI	GGGAC	2 cut(s)	242, 305
FatI	CATG	5 cut(s)	171, 562, 634, 684, 1027
FauI	CCCGC	2 cut(s)	219, 281
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	5, 299, 795, 983
FokI	GGATG	5 cut(s)	50, 182, 344, 772, 953
Fsp4HI	GCNGC	4 cut(s)	5, 299, 795, 983
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	4 cut(s)	5, 299, 795, 983
GsuI	CTGGAG	1 cut(s)	748
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	212, 298, 313
HapII	CCGG	4 cut(s)	131, 165, 218, 648
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	175, 566, 638, 688, 1031
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	5 cut(s)	168, 515, 622, 818, 1013
HpaII	CCGG	4 cut(s)	131, 165, 218, 648
HphI	GGTGA	3 cut(s)	120, 386, 754
Hpy166II	GTNNAC	3 cut(s)	308, 596, 901
Hpy188I	TCNGA	5 cut(s)	325, 627, 790, 823, 948
Hpy188III	TCNNGA	7 cut(s)	55, 172, 181, 199, 403, 727, 934
Hpy8I	GTNNAC	3 cut(s)	308, 596, 901
Hpy99I	CGWCG	4 cut(s)	108, 111, 329, 365
HpyAV	CCTTC	3 cut(s)	475, 724, 931
HpyCH4III	ACNGT	5 cut(s)	121, 347, 593, 813, 964
HpyCH4IV	ACGT	4 cut(s)	103, 378, 468, 756
HpyCH4V	TGCA	5 cut(s)	596, 688, 875, 971, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 268, 800, 988
HpyF3I	CTNAG	1 cut(s)	822
HpySE526I	ACGT	4 cut(s)	103, 378, 468, 756
Hsp92II	CATG	5 cut(s)	175, 566, 638, 688, 1031
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	57, 201, 273, 751
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	143, 865
Lsp1109I	GCAGC	1 cut(s)	806
LweI	GCATC	2 cut(s)	204, 735
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	4 cut(s)	103, 378, 468, 756
MaeIII	GTNAC	3 cut(s)	90, 115, 374
MalI	GATC	4 cut(s)	59, 203, 275, 753
MboI	GATC	4 cut(s)	57, 201, 273, 751
MboII	GAAGA	9 cut(s)	196, 268, 473, 631, 640, 691, 751, 818, 1030
MfeI	CAATTG	1 cut(s)	263
MhlI	GDGCHC	2 cut(s)	598, 655
MluCI	AATT	5 cut(s)	263, 436, 601, 657, 846
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	348, 393
MseI	TTAA	1 cut(s)	600
MspI	CCGG	4 cut(s)	131, 165, 218, 648
MspR9I	CCNGG	1 cut(s)	766
MunI	CAATTG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	4 cut(s)	223, 268, 800, 988
NdeII	GATC	4 cut(s)	57, 201, 273, 751
NlaIII	CATG	5 cut(s)	175, 566, 638, 688, 1031
NmeAIII	GCCGAG	4 cut(s)	127, 171, 327, 339
NmuCI	GTSAC	2 cut(s)	90, 374
NspI	RCATGY	1 cut(s)	1031
NspV	TTCGAA	1 cut(s)	1016
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 399
PfeI	GAWTC	4 cut(s)	168, 515, 622, 1013
PfoI	TCCNGGA	1 cut(s)	764
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	4 cut(s)	6, 300, 796, 984
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspPI	GGNCC	1 cut(s)	782
RsaI	GTAC	5 cut(s)	467, 706, 714, 852, 902
RsaNI	GTAC	5 cut(s)	466, 705, 713, 851, 901
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	4 cut(s)	5, 299, 795, 983
Sau3AI	GATC	4 cut(s)	57, 201, 273, 751
Sau96I	GGNCC	1 cut(s)	782
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	2 cut(s)	598, 655
SfaNI	GCATC	2 cut(s)	204, 735
SfcI	CTRYAG	3 cut(s)	488, 589, 864
SfuI	TTCGAA	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	782
Sse9I	AATT	5 cut(s)	263, 436, 601, 657, 846
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	9 cut(s)	5, 226, 288, 299, 337, 372, 389, 921, 983
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	5 cut(s)	121, 347, 593, 813, 964
TaiI	ACGT	4 cut(s)	106, 381, 471, 759
TaqI	TCGA	6 cut(s)	56, 182, 204, 447, 816, 1016
TasI	AATT	5 cut(s)	263, 436, 601, 657, 846
TatI	WGTACW	3 cut(s)	704, 712, 850
TauI	GCSGC	3 cut(s)	7, 301, 985
TfiI	GAWTC	4 cut(s)	168, 515, 622, 1013
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	2 cut(s)	598, 984
TseFI	GTSAC	2 cut(s)	90, 374
TseI	GCWGC	1 cut(s)	794
Tsp45I	GTSAC	2 cut(s)	90, 374
TspDTI	ATGAA	2 cut(s)	188, 551
TspGWI	ACGGA	2 cut(s)	356, 918
TspRI	CASTG	2 cut(s)	598, 984
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	782
XagI	CCTNNNNNAGG	1 cut(s)	203
XceI	RCATGY	1 cut(s)	1031
XspI	CTAG	1 cut(s)	840
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.