Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8108290.1

Orthogroup ID

OG0012916

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 518

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8108290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

gactattgaagattctgaagaaacatgacaagcgaaccggtgctctaattcggtttccctttgtccaaagggtcatgcaacagccattcttcagtactgatgtactcaataagctcgtgaaggagtgtgaggtgatgcttgatcacgtcttctccaggaatgacccatcaggtccatccgaagcagccaaagcagaagaacagtgcgactctgaggctgtggctgaaactagagaaattgtactgaaagctcctatagaacttgcagaaataaagcaaatggagagtgtgtacggaaagcaaactgaaaccgcattgcgtgtcttgaaggatgttcggagtggaagttcaactgttagtgcattttcactgccgcctttgcaaataaatgtggtggaggaggattcgaagaatatacatgctttacaacaagaagccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

5.97

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29180
malus_domestica	MD15G1124700.v1.1
prunus_persica	Prupe.1G480200_v2.0.a1 Prupe.1G480200_v2.0.a1
pyrus_communis	pycom15g11230
rosa_chinensis	RchiOBHm_Chr6g0298031
rosa_laevigata	RLG00000011541
rosa_multiflora	Rmu_co8108290.1_g000001 Rmu_sc0002800.1_g000017 Rmu_sc0035242.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169990 Rroxscaffold_7G00178820
rosa_rugosa	Rorug06G0278100
rosa_samantha	Rh6AG388500 Rh6BG396700 Rh6CG402700 Rh6DG389200
rosa_wichuraiana	Rw6G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	311, 373
AcuI	CTGAAG	2 cut(s)	37, 75
AfaI	GTAC	4 cut(s)	96, 104, 242, 292
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	9, 327, 350
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	154
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	114, 250
AluI	AGCT	2 cut(s)	114, 250
Alw21I	GWGCWC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	184
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	144
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	174, 183
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	185, 373
BlsI	GCNGC	2 cut(s)	186, 374
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 166, 274, 304, 330, 360
Bse118I	RCCGGY	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	175, 336
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	196
BshTI	ACCGGT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	311, 373
BspCNI	CTCAG	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	203, 354
BstBI	TTCGAA	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	175, 336
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 378
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	175, 336
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	208, 367
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	4 cut(s)	95, 103, 241, 291
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	3 cut(s)	25, 75, 418
CviJI	RGCY	7 cut(s)	84, 114, 187, 217, 223, 250, 436
CviKI_1	RGCY	7 cut(s)	84, 114, 187, 217, 223, 250, 436
CviQI	GTAC	4 cut(s)	95, 103, 241, 291
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	37, 75
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	28, 78, 421
FaiI	YATR	5 cut(s)	26, 76, 256, 415, 419
FatI	CATG	3 cut(s)	24, 74, 417
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	185, 373
FokI	GGATG	2 cut(s)	162, 343
Fsp4HI	GCNGC	2 cut(s)	185, 373
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	185, 373
GsuI	CTGGAG	1 cut(s)	138
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	3 cut(s)	28, 78, 421
HinfI	GANTC	3 cut(s)	12, 208, 403
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	17, 180, 213, 338
Hpy188III	TCNNGA	2 cut(s)	117, 324
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	2 cut(s)	114, 321
HpyCH4III	ACNGT	2 cut(s)	203, 354
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	4 cut(s)	78, 265, 361, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 378
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	28, 78, 421
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	4 cut(s)	51, 141, 155, 168
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	146
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	6 cut(s)	21, 30, 81, 141, 208, 420
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	47, 236
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	123, 207, 390, 393
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	190, 378
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	28, 78, 421
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	12, 403
PfoI	TCCNGGA	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	186, 374
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	4 cut(s)	96, 104, 242, 292
RsaNI	GTAC	4 cut(s)	95, 103, 241, 291
SatI	GCNGC	2 cut(s)	185, 373
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	116, 134, 149, 174, 252
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	47, 236
SsiI	CCGC	2 cut(s)	311, 373
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	203, 354
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	47, 236
TatI	WGTACW	3 cut(s)	94, 102, 240
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	12, 403
TscAI	CASTG	2 cut(s)	208, 374
TseI	GCWGC	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	208, 374
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.