Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002999.1

Orthogroup ID

OG0010542

Physical Location & Seq

Genomic Coordinates Reverse (-)

17973 .. 18873

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002999.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggctgagatgtatctgactgacaagctttctgttgagtcagacctagagaactcttctgcttcatccatgaatgagcagatgagagatgaaatggatgatgaaattcatcaagcagtagaagtggacgacaggaacagcgatactggtacaggtacaagcaagcagcttgatgttgaggagcttgaaatgcttttggaggcatactttgtccaaattgatggcacactcaacaagttatccacgctgagggaggatgtagacgacacagaggattacattaacataatgctggatgacaaacagaatcagctgctgcagatgggagtagttttatccacagcaacacttgtggtgaatgcgtttatcgttgttgccgggatctttggcatgaatatagggatcgaactgttcgatgaagaacttaaaacaggaaataagaagttcatgtggactattggtgggagttccatggcgtgtgtattcttctttgtgattgccattgcctggggtaagcatatgcgcttgctggatatcccatcactgttctctgtttgctcaaggagaatcagaaagaatgtaagatggtttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

198

Amino Acids

22.42

Weight (kDa)

4.35

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18840 FvH4_3g18840 FvH4_3g18840
prunus_persica	Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031661
rosa_laevigata	RLG00000033332
rosa_multiflora	Rmu_co8377751.1_g000001 Rmu_sc0002999.1_g000006 Rmu_sc0025521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048610
rosa_rugosa	Rorug05G0127300
rosa_samantha	Rh5AG221200 Rh5BG220800 Rh5BG220900 Rh5CG244200 Rh5DG225700 Rh6CG045300 Rh6DG041000
rosa_wichuraiana	Rw5G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	261
AclWI	GGATC	2 cut(s)	389, 410
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	2 cut(s)	151, 157
AfiI	CCNNNNNNNGG	2 cut(s)	249, 507
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	28, 169, 184, 313
AluI	AGCT	4 cut(s)	28, 169, 184, 313
AlwI	GGATC	2 cut(s)	389, 410
AlwNI	CAGNNNCTG	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	166, 313, 316
ApoI	RAATTY	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	178, 300, 303
BccI	CCATC	4 cut(s)	215, 316, 547, 579
BciT130I	CCWGG	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	3 cut(s)	167, 314, 317
BlsI	GCNGC	3 cut(s)	168, 315, 318
Bme1390I	CCNGG	2 cut(s)	379, 508
BmrFI	CCNGG	2 cut(s)	379, 508
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	471, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 507
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	471, 507
BseGI	GGATG	4 cut(s)	65, 103, 262, 301
BseLI	CCNNNNNNNGG	2 cut(s)	249, 507
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	178, 300, 303
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	249, 507
BsmI	GAATGC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	381, 402
Bsp19I	CCATGG	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	2 cut(s)	389, 410
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	471, 507
BssMI	GATC	2 cut(s)	381, 402
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	2 cut(s)	411, 546
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	164, 527
BstDEI	CTNAG	2 cut(s)	6, 248
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	65, 103, 262, 301
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	2 cut(s)	384, 405
BstMBI	GATC	2 cut(s)	381, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	377, 506
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	178, 300, 303
BstX2I	RGATCY	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	4 cut(s)	65, 103, 262, 301
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	2 cut(s)	164, 527
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	150, 156
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	4 cut(s)	70, 391, 448, 472
CviJI	RGCY	5 cut(s)	5, 28, 169, 184, 313
CviKI_1	RGCY	5 cut(s)	5, 28, 169, 184, 313
CviQI	GTAC	2 cut(s)	150, 156
DdeI	CTNAG	2 cut(s)	6, 248
DpnI	GATC	2 cut(s)	383, 404
DpnII	GATC	2 cut(s)	381, 402
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	506
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	4 cut(s)	73, 394, 451, 475
FaiI	YATR	9 cut(s)	71, 205, 287, 392, 398, 449, 473, 519, 521
FatI	CATG	4 cut(s)	69, 390, 447, 471
FauNDI	CATATG	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	167, 314, 317
FokI	GGATG	4 cut(s)	52, 110, 269, 308
Fsp4HI	GCNGC	3 cut(s)	167, 314, 317
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	3 cut(s)	167, 314, 317
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	4 cut(s)	73, 394, 451, 475
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	38, 307, 567
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	3 cut(s)	127, 262, 453
Hpy188I	TCNGA	3 cut(s)	18, 43, 572
Hpy8I	GTNNAC	3 cut(s)	127, 262, 453
HpyCH4III	ACNGT	2 cut(s)	411, 546
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	2 cut(s)	6, 248
Hsp92II	CATG	4 cut(s)	73, 394, 451, 475
HspAI	GCGC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	381, 402
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	9 cut(s)	118, 132, 138, 278, 391, 417, 493, 515, 520
Lsp1109I	GCAGC	3 cut(s)	178, 300, 303
MaeI	CTAG	1 cut(s)	47
MalI	GATC	2 cut(s)	383, 404
MboI	GATC	2 cut(s)	381, 402
MboII	GAAGA	3 cut(s)	48, 431, 478
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	2 cut(s)	105, 216
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	172, 193, 243, 247, 265
MseI	TTAA	3 cut(s)	282, 426, 595
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	379, 508
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	2 cut(s)	381, 402
NlaIII	CATG	4 cut(s)	73, 394, 451, 475
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	307, 567
PflMI	CCANNNNNTGG	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	168, 315, 318
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	151, 157
RsaNI	GTAC	2 cut(s)	150, 156
SaqAI	TTAA	3 cut(s)	282, 426, 595
SatI	GCNGC	3 cut(s)	167, 314, 317
Sau3AI	GATC	2 cut(s)	381, 402
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	379, 508
SetI	ASST	6 cut(s)	30, 48, 157, 171, 186, 315
SfcI	CTRYAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	2 cut(s)	105, 216
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	377, 506
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	411, 546
TaqI	TCGA	2 cut(s)	405, 414
TasI	AATT	2 cut(s)	105, 216
TfiI	GAWTC	2 cut(s)	307, 567
Tru1I	TTAA	3 cut(s)	282, 426, 595
Tru9I	TTAA	3 cut(s)	282, 426, 595
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	3 cut(s)	166, 313, 316
TspDTI	ATGAA	8 cut(s)	54, 86, 98, 105, 117, 407, 432, 436
TspRI	CASTG	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	507
XapI	RAATTY	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.