Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010542

Physical Location & Seq

Genomic Coordinates Reverse (-)

25475566 .. 25475874

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTGGATGACAAACAGAATCAGCTGCTGCAGATGGGAGTAGTTTTATCCACAGCAACACTTGTGGTGAATGCGTTTATCGTTGTTGCCGGGATCTTTGGCATGAATATAGGGATCGAACTGTTCGATGAAGAACTTAAAACAGGAAATAAGAAGTTCATGTGGACTATTGGTGGGAGTTCCATGGCGTGTGTATTCTTCTTTGTGATTGCCATTGCCTGGGGTAAGCATATGCGCTTGCTGGATATCCCATCACTGTTCTCTGTTTGCTCAAGGAGAATCAGAAAGAATGTAAGATGGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

102

Amino Acids

11.5

Weight (kDa)

9.51

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18840 FvH4_3g18840 FvH4_3g18840
prunus_persica	Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031661
rosa_laevigata	RLG00000033332
rosa_multiflora	Rmu_co8377751.1_g000001 Rmu_sc0002999.1_g000006 Rmu_sc0025521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048610
rosa_rugosa	Rorug05G0127300
rosa_samantha	Rh5AG221200 Rh5BG220800 Rh5BG220900 Rh5CG244200 Rh5DG225700 Rh6CG045300 Rh6DG041000
rosa_wichuraiana	Rw5G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AclWI	GGATC	2 cut(s)	101, 122
AfiI	CCNNNNNNNGG	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AlwI	GGATC	2 cut(s)	101, 122
AlwNI	CAGNNNCTG	1 cut(s)	28
ApeKI	GCWGC	2 cut(s)	25, 28
AspLEI	GCGC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	12, 15
BccI	CCATC	3 cut(s)	28, 259, 291
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	91
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	26, 29
BlsI	GCNGC	2 cut(s)	27, 30
Bme1390I	CCNGG	2 cut(s)	91, 220
BmrFI	CCNGG	2 cut(s)	91, 220
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	183, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	183, 219
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	12, 15
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	93, 114
Bsp19I	CCATGG	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	2 cut(s)	101, 122
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	183, 219
BssMI	GATC	2 cut(s)	93, 114
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	123, 258
BstC8I	GCNNGC	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	96, 117
BstMBI	GATC	2 cut(s)	93, 114
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	89, 218
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	12, 15
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	237
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	3 cut(s)	103, 160, 184
CviJI	RGCY	1 cut(s)	25
CviKI_1	RGCY	1 cut(s)	25
DpnI	GATC	2 cut(s)	95, 116
DpnII	GATC	2 cut(s)	93, 114
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	106, 163, 187
FaiI	YATR	6 cut(s)	104, 110, 161, 185, 231, 233
FatI	CATG	3 cut(s)	102, 159, 183
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	26, 29
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	26, 29
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	2 cut(s)	26, 29
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	106, 163, 187
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	19, 279
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	123, 258
HpyCH4V	TGCA	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	106, 163, 187
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	93, 114
LpnPI	CCDG	5 cut(s)	103, 129, 205, 227, 232
Lsp1109I	GCAGC	2 cut(s)	12, 15
MalI	GATC	2 cut(s)	95, 116
MboI	GATC	2 cut(s)	93, 114
MboII	GAAGA	2 cut(s)	143, 190
MflI	RGATCY	1 cut(s)	93
MseI	TTAA	2 cut(s)	138, 307
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	91, 220
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	220
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	2 cut(s)	93, 114
NlaIII	CATG	3 cut(s)	106, 163, 187
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	19, 279
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	27, 30
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	138, 307
SatI	GCNGC	2 cut(s)	26, 29
Sau3AI	GATC	2 cut(s)	93, 114
ScrFI	CCNGG	2 cut(s)	91, 220
SetI	ASST	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
StyD4I	CCNGG	2 cut(s)	89, 218
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	123, 258
TaqI	TCGA	2 cut(s)	117, 126
TfiI	GAWTC	2 cut(s)	19, 279
Tru1I	TTAA	2 cut(s)	138, 307
Tru9I	TTAA	2 cut(s)	138, 307
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	25, 28
TspDTI	ATGAA	3 cut(s)	119, 144, 148
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.