Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025521.1

Orthogroup ID

OG0010542

Physical Location & Seq

Genomic Coordinates Forward (+)

2564 .. 2974

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025521.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagacctcatcatcagcttcttccccagccctccaagtcaagcccgccagccgtagaagaccccgccggatcccaccgtccacccgtcgccgggtcagtgggccttcttgggcccaggaagaaagggaccaaggctacaacaagtgttcgtgcgtggctgctgattgactccgaaggcaactctcaagttttggaggccggaaaacacgccatcatgcggcgcacgggtctgccggcccgggacctccggatcctcgacccggttctgcggtgcccgtcgactgtgctagggagagagagagctattgttataaacctggaacacatcaaggccatcatcactgcccaggaggtcttgctggtcaactccgctgacctttctgtcacgccgttcgttgacgagcttcga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

137

Amino Acids

14.81

Weight (kDa)

9.99

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18840 FvH4_3g18840 FvH4_3g18840
prunus_persica	Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031661
rosa_laevigata	RLG00000033332
rosa_multiflora	Rmu_co8377751.1_g000001 Rmu_sc0002999.1_g000006 Rmu_sc0025521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048610
rosa_rugosa	Rorug05G0127300
rosa_samantha	Rh5AG221200 Rh5BG220800 Rh5BG220900 Rh5CG244200 Rh5DG225700 Rh6CG045300 Rh6DG041000
rosa_wichuraiana	Rw5G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	5 cut(s)	47, 66, 220, 271, 372
AclWI	GGATC	4 cut(s)	66, 79, 247, 260
AfiI	CCNNNNNNNGG	4 cut(s)	92, 93, 219, 262
AjnI	CCWGG	3 cut(s)	116, 318, 348
AluBI	AGCT	3 cut(s)	19, 305, 406
AluI	AGCT	3 cut(s)	19, 305, 406
AlwI	GGATC	4 cut(s)	66, 79, 247, 260
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	5 cut(s)	103, 113, 198, 237, 333
ApaI	GGGCCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	6 cut(s)	103, 113, 114, 129, 238, 244
AsuC2I	CCSGG	4 cut(s)	94, 241, 242, 263
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	129, 244
BaeGI	GKGCMC	2 cut(s)	117, 278
BamHI	GGATCC	2 cut(s)	71, 252
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	221, 344
BceAI	ACGGC	2 cut(s)	38, 376
BciT130I	CCWGG	3 cut(s)	118, 320, 350
BcnI	CCSGG	4 cut(s)	94, 241, 242, 263
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	161, 221
BlsI	GCNGC	2 cut(s)	162, 222
Bme1390I	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
Bme18I	GGWCC	2 cut(s)	129, 244
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	6 cut(s)	103, 113, 114, 129, 238, 244
BmiI	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
BmrFI	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
BpiI	GAAGAC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	4 cut(s)	94, 241, 242, 263
BsaJI	CCNNGG	4 cut(s)	116, 132, 240, 348
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 93, 219, 262
Bse118I	RCCGGY	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	118, 320, 350
BseDI	CCNNGG	4 cut(s)	116, 132, 240, 348
BseLI	CCNNNNNNNGG	4 cut(s)	92, 93, 219, 262
BseSI	GKGCMC	2 cut(s)	117, 278
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BshNI	GGYRCC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
BslFI	GGGAC	2 cut(s)	142, 257
BslI	CCNNNNNNNGG	4 cut(s)	92, 93, 219, 262
BsmFI	GGGAC	2 cut(s)	142, 257
BsnI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BsoBI	CYCGRG	1 cut(s)	240
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	117, 278
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	71, 252
BspACI	CCGC	5 cut(s)	47, 66, 220, 271, 372
BspANI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BspEI	TCCGGA	1 cut(s)	249
BspLI	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
BspPI	GGATC	4 cut(s)	66, 79, 247, 260
BspT107I	GGYRCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	116, 132, 240, 348
BssMI	GATC	2 cut(s)	71, 252
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	3 cut(s)	118, 320, 350
Bst4CI	ACNGT	2 cut(s)	80, 286
BstC8I	GCNNGC	3 cut(s)	47, 51, 237
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	74, 255
BstMBI	GATC	2 cut(s)	71, 252
BstNI	CCWGG	3 cut(s)	118, 320, 350
BstSCI	CCNGG	7 cut(s)	92, 116, 239, 240, 261, 318, 348
BstSLI	GKGCMC	2 cut(s)	117, 278
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	71, 252
BstYI	RGATCY	2 cut(s)	71, 252
BsuRI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	105, 342
Cac8I	GCNNGC	3 cut(s)	47, 51, 237
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	6 cut(s)	103, 113, 114, 129, 238, 244
Cfr9I	CCCGGG	1 cut(s)	240
CviAII	CATG	1 cut(s)	217
DpnI	GATC	2 cut(s)	73, 254
DpnII	GATC	2 cut(s)	71, 252
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	129, 244
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	3 cut(s)	116, 318, 348
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	220
FaiI	YATR	2 cut(s)	218, 314
FaqI	GGGAC	2 cut(s)	142, 257
FatI	CATG	1 cut(s)	216
FauI	CCCGC	2 cut(s)	54, 73
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	161, 221
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	161, 221
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	161, 221
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	5 cut(s)	105, 115, 200, 239, 335
HapII	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	3 cut(s)	282, 367, 400
HindII	GTYRAC	3 cut(s)	282, 367, 400
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
Hpy166II	GTNNAC	4 cut(s)	83, 282, 367, 400
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	4 cut(s)	83, 282, 367, 400
Hpy99I	CGWCG	2 cut(s)	92, 283
HpyAV	CCTTC	2 cut(s)	116, 170
HpyCH4III	ACNGT	2 cut(s)	80, 286
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	71, 252
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	73, 254
MboI	GATC	2 cut(s)	71, 252
MboII	GAAGA	3 cut(s)	14, 71, 133
MflI	RGATCY	2 cut(s)	71, 252
MhlI	GDGCHC	2 cut(s)	117, 278
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	6 cut(s)	18, 43, 190, 257, 266, 346
MroI	TCCGGA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
MspR9I	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
MvaI	CCWGG	3 cut(s)	118, 320, 350
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	4 cut(s)	94, 241, 242, 263
NdeII	GATC	2 cut(s)	71, 252
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
NmuCI	GTSAC	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	162, 222
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	116, 318, 348
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	3 cut(s)	116, 318, 348
PspN4I	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	6 cut(s)	103, 113, 114, 129, 238, 244
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	71, 252
SalI	GTCGAC	1 cut(s)	280
SatI	GCNGC	2 cut(s)	161, 221
Sau3AI	GATC	2 cut(s)	71, 252
Sau96I	GGNCC	6 cut(s)	103, 113, 114, 129, 238, 244
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
SduI	GDGCHC	2 cut(s)	117, 278
SetI	ASST	8 cut(s)	10, 21, 249, 307, 321, 357, 381, 408
SinI	GGWCC	2 cut(s)	129, 244
SmaI	CCCGGG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SsiI	CCGC	5 cut(s)	47, 66, 220, 271, 372
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	7 cut(s)	92, 116, 239, 240, 261, 318, 348
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	80, 286
TaqI	TCGA	3 cut(s)	258, 281, 409
TauI	GCSGC	1 cut(s)	223
TscAI	CASTG	2 cut(s)	105, 349
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	385
TspMI	CCCGGG	1 cut(s)	240
TspRI	CASTG	2 cut(s)	105, 349
VpaK11BI	GGWCC	2 cut(s)	129, 244
XmaI	CCCGGG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.