Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010542

Physical Location & Seq

Genomic Coordinates Reverse (-)

25428990 .. 25433278

Gene Structure 4289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG244200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAGACCTCATCATCAGCTTCTTCCCCAGCCCTCCAAGTCAAGCCCACCAGCCGTAGAAGACCCCGCCGGATCCCACCGTCCACCCGTCGCCGGGTCAGTGGGCCTTCTTGGGCCCAGGAAGAAAGGGACCAAGGCTACAACAAGTGTTCGTGCGTGGCTGCTGATTGACTCCGAAGGCAACTCTCAAGTTTTGGAGGCCGGAAAACACGCCATCATGCGGCGCACGGGTCTGCCGGCCCGGGACCTCCGGATCCTCGACCCGGTTCTGCGGTGCCCGTCGACGGTGCTAGGGAGAGAGAGAGCTATTGTTATAAACCTGGAACACATCAAGGCCATCATCACTGCCCAGGAGGTCTTGCTGGTCAACTCCGCTGACCTTTCTGTCACGCCGTTCGTTGACGAGCTTCGACGTAGGCTGGTCCGCCATCAACAAGCAACCACCATAGCTTCGGAGGGTAATGATGATGGTCATACAAAGTTGCATGATTTGGGAGAGTCGCGTCAGAATTCTCCAAGTGGTCAACATGATGGAGTAGGGAAAGAAGTTGTGAAGAAGCAATTATATGGATCAAAGGTTCTTAGCTTTGAGTTTGTAGCACTAGAGACTTGTCTTGAGGCTGCTTGCACTTCCTTAGAAAATGAAGCAAAGGGATTGGAGAAAGAAGCTCATCCAGCTTTGGAGAAGCTCAGTTCCAAGATTAGTACTTTGAATTTAGAACGTGTCCGCCAAATCAAAAGCCGCTTGGTTGCTATATCAGGACGTGTCCAGAAGGTGAGGGATGAAATAGAACATTTGCTAGATGATGATGAAGACATGGCTGAGATGTATCTGACTGACAAGCTTTCTGTTGAGTCAGACCTAGAGAACTCTTCTGCTTCATCCATGAATGAGCAGATGAGAGATGAAATGGATGATGAAATTCATCAAGCAGCAGAAGTGGACGACAGGAACAGCGATACTGGTACAGGTACAAGCAAGCAGCTTGATGTTGAGGAGCTAGAAATGCTTTTGGAGGCATACTTTGTCCAAATTGATGGCACACTAAACAAGTTATCCACGGTATATCTGCAACTCAGATCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

362

Amino Acids

39.95

Weight (kDa)

5.39

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	56 - 141	2.2e-10	Magnesium transporter MRS2-like
MRS2-like	PF22099	191 - 313	5.1e-16	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18840 FvH4_3g18840 FvH4_3g18840
prunus_persica	Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031661
rosa_laevigata	RLG00000033332
rosa_multiflora	Rmu_co8377751.1_g000001 Rmu_sc0002999.1_g000006 Rmu_sc0025521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048610
rosa_rugosa	Rorug05G0127300
rosa_samantha	Rh5AG221200 Rh5BG220800 Rh5BG220900 Rh5CG244200 Rh5DG225700 Rh6CG045300 Rh6DG041000
rosa_wichuraiana	Rw5G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	502
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	7 cut(s)	66, 220, 271, 372, 424, 727, 742
AclWI	GGATC	5 cut(s)	66, 79, 247, 260, 577
AcsI	RAATTY	3 cut(s)	508, 712, 921
AfaI	GTAC	3 cut(s)	706, 967, 973
AfiI	CCNNNNNNNGG	5 cut(s)	92, 93, 219, 262, 283
AflIII	ACRYGT	2 cut(s)	721, 763
AgsI	TTSAA	1 cut(s)	712
AjiI	CACGTC	1 cut(s)	764
AjnI	CCWGG	3 cut(s)	116, 318, 348
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	5 cut(s)	66, 79, 247, 260, 577
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	5 cut(s)	103, 113, 198, 237, 333
ApaI	GGGCCC	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	160, 620, 932, 982
ApoI	RAATTY	3 cut(s)	508, 712, 921
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	7 cut(s)	103, 113, 114, 129, 238, 244, 421
AsuC2I	CCSGG	4 cut(s)	94, 241, 242, 263
AsuHPI	GGTGA	1 cut(s)	787
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	3 cut(s)	129, 244, 421
BaeGI	GKGCMC	2 cut(s)	117, 278
BamHI	GGATCC	2 cut(s)	71, 252
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	66, 819
BbvI	GCAGC	4 cut(s)	147, 607, 944, 994
BccI	CCATC	6 cut(s)	221, 344, 435, 461, 524, 1031
BceAI	ACGGC	2 cut(s)	38, 376
BciT130I	CCWGG	3 cut(s)	118, 320, 350
BcnI	CCSGG	4 cut(s)	94, 241, 242, 263
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	6 cut(s)	290, 602, 800, 863, 1001, 1087
BisI	GCNGC	6 cut(s)	161, 221, 621, 742, 933, 983
BlsI	GCNGC	6 cut(s)	162, 222, 622, 743, 934, 984
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
Bme18I	GGWCC	3 cut(s)	129, 244, 421
BmeT110I	CYCGRG	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	764
BmgT120I	GGNCC	7 cut(s)	103, 113, 114, 129, 238, 244, 421
BmiI	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
BmrFI	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
BpiI	GAAGAC	2 cut(s)	66, 819
BpuEI	CTTGAG	2 cut(s)	171, 635
BpuMI	CCSGG	4 cut(s)	94, 241, 242, 263
BsaJI	CCNNGG	5 cut(s)	116, 132, 240, 348, 1059
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 93, 219, 262, 283
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	967
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	118, 320, 350
BseDI	CCNNGG	5 cut(s)	116, 132, 240, 348, 1059
BseGI	GGATG	4 cut(s)	670, 787, 881, 919
BseLI	CCNNNNNNNGG	5 cut(s)	92, 93, 219, 262, 283
BseMII	CTCAG	2 cut(s)	703, 813
BseNI	ACTGG	1 cut(s)	967
BseRI	GAGGAG	1 cut(s)	1010
BseSI	GKGCMC	2 cut(s)	117, 278
BseXI	GCAGC	4 cut(s)	147, 607, 944, 994
BseYI	CCCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BshNI	GGYRCC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
BslFI	GGGAC	2 cut(s)	142, 257
BslI	CCNNNNNNNGG	5 cut(s)	92, 93, 219, 262, 283
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	2 cut(s)	142, 257
BsnI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BsoBI	CYCGRG	1 cut(s)	240
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	117, 278
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	71, 252, 569, 1079
BspACI	CCGC	7 cut(s)	66, 220, 271, 372, 424, 727, 742
BspANI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BspCNI	CTCAG	3 cut(s)	702, 814, 1089
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
BspPI	GGATC	5 cut(s)	66, 79, 247, 260, 577
BspT107I	GGYRCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	967
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	5 cut(s)	116, 132, 240, 348, 1059
BssMI	GATC	4 cut(s)	71, 252, 569, 1079
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	3 cut(s)	118, 320, 350
Bst4CI	ACNGT	3 cut(s)	80, 286, 1063
Bst6I	CTCTTC	1 cut(s)	877
BstC8I	GCNNGC	3 cut(s)	237, 625, 980
BstDEI	CTNAG	5 cut(s)	581, 634, 689, 822, 1076
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	4 cut(s)	670, 787, 881, 919
BstFNI	CGCG	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	4 cut(s)	74, 255, 572, 1082
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	4 cut(s)	71, 252, 569, 1079
BstMWI	GCNNNNNNNGC	2 cut(s)	674, 1006
BstNI	CCWGG	3 cut(s)	118, 320, 350
BstSCI	CCNGG	7 cut(s)	92, 116, 239, 240, 261, 318, 348
BstSLI	GKGCMC	2 cut(s)	117, 278
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	4 cut(s)	147, 607, 944, 994
BstV2I	GAAGAC	2 cut(s)	66, 819
BstX2I	RGATCY	2 cut(s)	71, 252
BstXI	CCANNNNNNTGG	1 cut(s)	1037
BstYI	RGATCY	2 cut(s)	71, 252
BsuRI	GGCC	5 cut(s)	105, 115, 200, 239, 335
BtgI	CCRYGG	1 cut(s)	1059
BtrI	CACGTC	1 cut(s)	764
BtsCI	GGATG	4 cut(s)	670, 787, 881, 919
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	105, 342
Cac8I	GCNNGC	3 cut(s)	237, 625, 980
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	7 cut(s)	103, 113, 114, 129, 238, 244, 421
Cfr9I	CCCGGG	1 cut(s)	240
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	705, 966, 972
CviAII	CATG	5 cut(s)	217, 485, 527, 817, 886
CviQI	GTAC	3 cut(s)	705, 966, 972
DdeI	CTNAG	5 cut(s)	581, 634, 689, 822, 1076
DpnI	GATC	4 cut(s)	73, 254, 571, 1081
DpnII	GATC	4 cut(s)	71, 252, 569, 1079
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	877
EarI	CTCTTC	1 cut(s)	877
EciI	GGCGGA	2 cut(s)	413, 716
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	129, 244, 421
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	116, 318, 348
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	5 cut(s)	220, 488, 530, 820, 889
FaqI	GGGAC	2 cut(s)	142, 257
FatI	CATG	5 cut(s)	216, 484, 526, 816, 885
FauI	CCCGC	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	6 cut(s)	161, 221, 621, 742, 933, 983
FokI	GGATG	4 cut(s)	657, 794, 868, 926
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	161, 221, 621, 742, 933, 983
FspBI	CTAG	6 cut(s)	290, 602, 800, 863, 1001, 1087
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	6 cut(s)	161, 221, 621, 742, 933, 983
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	5 cut(s)	105, 115, 200, 239, 335
HapII	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
HgaI	GACGC	1 cut(s)	491
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	220, 488, 530, 820, 889
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	4 cut(s)	282, 367, 400, 524
HindII	GTYRAC	4 cut(s)	282, 367, 400, 524
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	3 cut(s)	170, 497, 854
HpaII	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
HphI	GGTGA	1 cut(s)	787
Hpy166II	GTNNAC	6 cut(s)	83, 282, 367, 400, 524, 943
Hpy188I	TCNGA	6 cut(s)	175, 454, 507, 834, 859, 1079
Hpy188III	TCNNGA	4 cut(s)	250, 614, 759, 769
Hpy8I	GTNNAC	6 cut(s)	83, 282, 367, 400, 524, 943
Hpy99I	CGWCG	4 cut(s)	92, 283, 286, 414
HpyAV	CCTTC	3 cut(s)	116, 170, 766
HpyCH4III	ACNGT	3 cut(s)	80, 286, 1063
HpyCH4IV	ACGT	3 cut(s)	412, 721, 763
HpyCH4V	TGCA	3 cut(s)	484, 627, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	674, 1006
HpyF3I	CTNAG	5 cut(s)	581, 634, 689, 822, 1076
HpySE526I	ACGT	3 cut(s)	412, 721, 763
Hsp92II	CATG	5 cut(s)	220, 488, 530, 820, 889
HspAI	GCGC	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	71, 252, 569, 1079
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	4 cut(s)	147, 607, 944, 994
MaeI	CTAG	6 cut(s)	290, 602, 800, 863, 1001, 1087
MaeII	ACGT	3 cut(s)	412, 721, 763
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	73, 254, 571, 1081
MboI	GATC	4 cut(s)	71, 252, 569, 1079
MboII	GAAGA	6 cut(s)	14, 71, 133, 565, 824, 864
MflI	RGATCY	2 cut(s)	71, 252
MhlI	GDGCHC	2 cut(s)	117, 278
MluCI	AATT	5 cut(s)	508, 560, 712, 921, 1032
MlyI	GAGTC	3 cut(s)	164, 506, 863
MroI	TCCGGA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	7 cut(s)	69, 93, 201, 236, 241, 250, 263
MspR9I	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
MvaI	CCWGG	3 cut(s)	118, 320, 350
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	674, 1006
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	4 cut(s)	94, 241, 242, 263
NdeII	GATC	4 cut(s)	71, 252, 569, 1079
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	5 cut(s)	220, 488, 530, 820, 889
NlaIV	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
NmuCI	GTSAC	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	237
PkrI	GCNGC	6 cut(s)	162, 222, 622, 743, 934, 984
PleI	GAGTC	3 cut(s)	164, 505, 862
PpsI	GAGTC	3 cut(s)	164, 505, 862
PpuMI	RGGWCCY	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	116, 318, 348
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	3 cut(s)	116, 318, 348
PspN4I	GGNNCC	6 cut(s)	73, 115, 130, 245, 254, 275
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	7 cut(s)	103, 113, 114, 129, 238, 244, 421
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	71, 252
RsaI	GTAC	3 cut(s)	706, 967, 973
RsaNI	GTAC	3 cut(s)	705, 966, 972
SalI	GTCGAC	1 cut(s)	280
SatI	GCNGC	6 cut(s)	161, 221, 621, 742, 933, 983
Sau3AI	GATC	4 cut(s)	71, 252, 569, 1079
Sau96I	GGNCC	7 cut(s)	103, 113, 114, 129, 238, 244, 421
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	3 cut(s)	164, 506, 863
ScrFI	CCNGG	7 cut(s)	94, 118, 241, 242, 263, 320, 350
SduI	GDGCHC	2 cut(s)	117, 278
SgrDI	CGTCGACG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	129, 244, 421
SmaI	CCCGGG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	186, 614
SmoI	CTYRAG	2 cut(s)	186, 614
Sse9I	AATT	5 cut(s)	508, 560, 712, 921, 1032
SsiI	CCGC	7 cut(s)	66, 220, 271, 372, 424, 727, 742
SspMI	CTAG	6 cut(s)	290, 602, 800, 863, 1001, 1087
StyD4I	CCNGG	7 cut(s)	92, 116, 239, 240, 261, 318, 348
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	80, 286, 1063
TaiI	ACGT	3 cut(s)	415, 724, 766
TaqI	TCGA	3 cut(s)	258, 281, 409
TasI	AATT	5 cut(s)	508, 560, 712, 921, 1032
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	2 cut(s)	223, 744
TscAI	CASTG	2 cut(s)	105, 349
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	4 cut(s)	160, 620, 932, 982
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	8 cut(s)	657, 798, 825, 870, 902, 914, 921, 933
TspMI	CCCGGG	1 cut(s)	240
TspRI	CASTG	2 cut(s)	105, 349
VpaK11BI	GGWCC	3 cut(s)	129, 244, 421
XapI	RAATTY	3 cut(s)	508, 712, 921
XmaI	CCCGGG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	6 cut(s)	290, 602, 800, 863, 1001, 1087
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.