Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010542

Physical Location & Seq

Genomic Coordinates Forward (+)

4462987 .. 4463460

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGACCTCATCATCAACTTCTTCCTCAGCCCTCCAACTCAAGCCCGCCACCTCCACCAGCCGTAGAAGATGCCGCCGAATCCCACCGTCCACTTGCCGCCGTGTTTACGGGCCTTCCTGGGCCAAGGAAGAAAGGGACCAAGGCGACCACAAGTGTCCGTGCCTGGCTGATGATCAACTTCGGCGGCAACTCTCAAGTTGTGGAGGCCAAAAAACACACCATCATGGTGCGCACGGGTCTGCCGGCCAGGGACCTATATGATAAAGTAATCTGGGGTTCACATCCAAAACCAATTGGCAATAGATGGAGTGGCCCAAACCCTTATAAACTCATAAGCAAAGTTATATTTTTCCAATGTGGGAGTTATATTTATACACATTCTCAACACGCCCCCGCACATGTGGCGATTTATCAAGCCATACATGTGGACAAGTTATATTGGGTGACGGTGAGCACGTGTGGTCATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

10.01

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18840 FvH4_3g18840 FvH4_3g18840
prunus_persica	Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1 Prupe.8G147400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031661
rosa_laevigata	RLG00000033332
rosa_multiflora	Rmu_co8377751.1_g000001 Rmu_sc0002999.1_g000006 Rmu_sc0025521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048610
rosa_rugosa	Rorug05G0127300
rosa_samantha	Rh5AG221200 Rh5BG220800 Rh5BG220900 Rh5CG244200 Rh5DG225700 Rh6CG045300 Rh6DG041000
rosa_wichuraiana	Rw5G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
Acc16I	TGCGCA	1 cut(s)	233
AciI	CCGC	5 cut(s)	47, 75, 99, 186, 396
AcoI	YGGCCR	1 cut(s)	246
AcvI	CACGTG	1 cut(s)	459
AflIII	ACRYGT	3 cut(s)	400, 424, 458
AjnI	CCWGG	3 cut(s)	118, 164, 248
Alw21I	GWGCWC	1 cut(s)	458
AoxI	GGCC	5 cut(s)	112, 122, 207, 246, 313
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	5 cut(s)	112, 122, 138, 253, 314
AsuHPI	GGTGA	2 cut(s)	457, 463
AvaII	GGWCC	2 cut(s)	138, 253
BbrPI	CACGTG	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	458
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	230, 300
BceAI	ACGGC	2 cut(s)	47, 86
BciT130I	CCWGG	3 cut(s)	120, 166, 250
BclI	TGATCA	1 cut(s)	174
BisI	GCNGC	3 cut(s)	75, 99, 187
BlsI	GCNGC	3 cut(s)	76, 100, 188
Bme1390I	CCNGG	3 cut(s)	120, 166, 250
Bme18I	GGWCC	2 cut(s)	138, 253
BmgT120I	GGNCC	5 cut(s)	112, 122, 138, 253, 314
BmiI	GGNNCC	2 cut(s)	139, 254
BmrFI	CCNGG	3 cut(s)	120, 166, 250
BmsI	GCATC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	25, 180
BsaAI	YACGTR	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	119, 125, 141, 249
Bse118I	RCCGGY	1 cut(s)	244
BseBI	CCWGG	3 cut(s)	120, 166, 250
BseDI	CCNNGG	4 cut(s)	119, 125, 141, 249
BseGI	GGATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	41
BshFI	GGCC	5 cut(s)	114, 124, 209, 248, 315
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	151, 266
BsmFI	GGGAC	2 cut(s)	151, 266
BsnI	GGCC	5 cut(s)	114, 124, 209, 248, 315
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	47, 75, 99, 186, 396
BspANI	GGCC	5 cut(s)	114, 124, 209, 248, 315
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	139, 254
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	4 cut(s)	119, 125, 141, 249
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	125, 141
Bst2UI	CCWGG	3 cut(s)	120, 166, 250
Bst4CI	ACNGT	2 cut(s)	89, 451
BstBAI	YACGTR	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	47, 246
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	3 cut(s)	120, 166, 250
BstNSI	RCATGY	2 cut(s)	404, 428
BstSCI	CCNGG	3 cut(s)	118, 164, 248
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	5 cut(s)	114, 124, 209, 248, 315
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	47, 246
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	5 cut(s)	112, 122, 138, 253, 314
CviAII	CATG	3 cut(s)	226, 401, 425
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	125, 141
Eco47I	GGWCC	2 cut(s)	138, 253
Eco72I	CACGTG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	3 cut(s)	118, 164, 248
EcoT14I	CCWWGG	2 cut(s)	125, 141
ErhI	CCWWGG	2 cut(s)	125, 141
FaeI	CATG	3 cut(s)	229, 404, 428
FaqI	GGGAC	2 cut(s)	151, 266
FatI	CATG	3 cut(s)	225, 400, 424
FauI	CCCGC	2 cut(s)	54, 403
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	75, 99, 187
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	75, 99, 187
FspAI	RTGCGCAY	1 cut(s)	233
FspI	TGCGCA	1 cut(s)	233
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	3 cut(s)	75, 99, 187
HaeIII	GGCC	5 cut(s)	114, 124, 209, 248, 315
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	229, 404, 428
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	457, 463
Hpy166II	GTNNAC	4 cut(s)	92, 108, 281, 430
Hpy8I	GTNNAC	4 cut(s)	92, 108, 281, 430
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	89, 451
HpyCH4IV	ACGT	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	229, 404, 428
HspAI	GCGC	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	9 cut(s)	72, 105, 132, 151, 178, 235, 258, 259, 262
LweI	GCATC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	14, 80, 142
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	18, 36, 43, 63, 199
MroNI	GCCGGC	1 cut(s)	244
MslI	CAYNNNNRTG	3 cut(s)	224, 227, 425
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	3 cut(s)	120, 166, 250
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	3 cut(s)	120, 166, 250
MwoI	GCNNNNNNNGC	1 cut(s)	404
NaeI	GCCGGC	1 cut(s)	246
NdeII	GATC	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	229, 404, 428
NlaIV	GGNNCC	2 cut(s)	139, 254
NmuCI	GTSAC	1 cut(s)	445
NsbI	TGCGCA	1 cut(s)	233
NspI	RCATGY	2 cut(s)	404, 428
PciI	ACATGT	2 cut(s)	400, 424
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PdiI	GCCGGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	76, 100, 188
PmaCI	CACGTG	1 cut(s)	459
PmlI	CACGTG	1 cut(s)	459
Ppu21I	YACGTR	1 cut(s)	459
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	2 cut(s)	400, 424
PsiI	TTATAA	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	3 cut(s)	118, 164, 248
PspCI	CACGTG	1 cut(s)	459
PspGI	CCWGG	3 cut(s)	118, 164, 248
PspN4I	GGNNCC	2 cut(s)	139, 254
PspPI	GGNCC	5 cut(s)	112, 122, 138, 253, 314
PspPPI	RGGWCCY	1 cut(s)	253
RseI	CAYNNNNRTG	3 cut(s)	224, 227, 425
SatI	GCNGC	3 cut(s)	75, 99, 187
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	5 cut(s)	112, 122, 138, 253, 314
ScrFI	CCNGG	3 cut(s)	120, 166, 250
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	4 cut(s)	10, 55, 258, 461
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	2 cut(s)	138, 253
SmiMI	CAYNNNNRTG	3 cut(s)	224, 227, 425
SmlI	CTYRAG	2 cut(s)	40, 195
SmoI	CTYRAG	2 cut(s)	40, 195
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	5 cut(s)	47, 75, 99, 186, 396
StyD4I	CCNGG	3 cut(s)	118, 164, 248
StyI	CCWWGG	2 cut(s)	125, 141
TaaI	ACNGT	2 cut(s)	89, 451
TaiI	ACGT	1 cut(s)	461
TasI	AATT	1 cut(s)	294
TauI	GCSGC	3 cut(s)	77, 101, 189
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	138, 253
XceI	RCATGY	2 cut(s)	404, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.