Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003016.1

Orthogroup ID

OG0017201

Physical Location & Seq

Genomic Coordinates Reverse (-)

42533 .. 43912

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003016.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

atgaatgagggcgtggagcctgattgtgccactttggtttccttgttaccggttattggttccttgaggtctaaggtattgggaagatgtgttcatgcctttgtggaagagaagggtttggggaagaatttggtactgaggaatgcactggtggatatgtatattaggtgcggtagcatgaacgaggcgcgagttgtttttgaaaacatgggtgagagggatgtggtgacatggagtactatgatcaatgggtatattttgagcggtgaaccaagaggtgcattggcgctttgttggctgatgcagtgtgaaggtgtaaagccaaattctgtaacaatagcttctctactttcggcctgtgggagtttgcatcttttaaagcaaggaaagtgcttgcatgggtggactattaggcaaaagcttgagtctgatgttatggtggtgactgctttaattgacatgtattcgaaaagcacttgtattgatcagagctttcaagtgtttgcaaagacttcaaaaaagaaaaccgttccctggaattcgataatttctggatgcattcacaatagtcttgccatagaagcaatagaatttttcaaacagatgctggtggaagccgtacaacccaatgaagcaacactgaatagtctccttcctgcgtattccattcttgctgatttacatcaagcaatgaatatacatggttacctagtgagatctgggtttctttcatgcattgaagttgctactggtttgattgattcatactcaaaggctggaagtttagaatatgctcacataactttcaatggaatttcagagaagcacagggatattgttctatggagtgtgataatagctggttacggaacacatggccatggcaagattgctgtttcacttttctatcagatggtgcaatctggggtgagaccaaacgaggtcacttttacctctgttctgcatgcttgcagccatgctggtttggtggatgagggcttggggttattcatattcatgcttaaagatccgaaactgattcccaaggctgatcactacacatgcattattgatcttcttggtcgtgcaggtcgattggcagaagcttatgatcttattagaacaatgccatttcagcctcatcatgctatttggggtgcactacttggtgcctgtgtgatacatgataatgttgaactaggagaggttgctgctaagtggctttttgagcttgagccagaaaacacaggaaactatatattgatggcaaaaatttatgctgcagtgggaagatggaaagatgcagaaaatgtgagacatatgatgaacgaaatagggttaagaaaatcagcagctcacagtctagtaatcttaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofilin_ADF PPR PPR_2

Protein Analysis

459

Amino Acids

50.51

Weight (kDa)

6.65

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39350
fragaria_vesca	FvH4_6g47350
malus_domestica	MD09G1062000.v1.1
prunus_persica	Prupe.3G258100_v2.0.a1
pyrus_communis	pycom111g05230
rosa_chinensis	RchiOBHm_Chr2g0166381
rosa_laevigata	RLG00000021616
rosa_multiflora	Rmu_sc0003016.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084920
rosa_rugosa	Rorug02G0522600
rosa_samantha	Rh2BG600800 Rh2CG571500
rosa_wichuraiana	Rw2G049070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	1169
AccBSI	CCGCTC	1 cut(s)	264
AccII	CGCG	1 cut(s)	190
AciI	CCGC	2 cut(s)	171, 264
AclWI	GGATC	1 cut(s)	1022
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	6 cut(s)	127, 325, 538, 590, 813, 1272
AfaI	GTAC	3 cut(s)	135, 238, 621
AfiI	CCNNNNNNNGG	2 cut(s)	56, 534
AflIII	ACRYGT	1 cut(s)	459
AgeI	ACCGGT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	203, 497, 516, 598, 740, 808, 1196
AjnI	CCWGG	1 cut(s)	533
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	7 cut(s)	341, 421, 492, 860, 1106, 1231, 1355
AluI	AGCT	7 cut(s)	341, 421, 492, 860, 1106, 1231, 1355
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	3 cut(s)	653, 925, 1309
Alw44I	GTGCAC	1 cut(s)	1158
AlwI	GGATC	1 cut(s)	1022
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	2 cut(s)	354, 877
ApaLI	GTGCAC	1 cut(s)	1158
ApeKI	GCWGC	4 cut(s)	972, 1211, 1280, 1352
ApoI	RAATTY	6 cut(s)	127, 325, 538, 590, 813, 1272
AsiGI	ACCGGT	1 cut(s)	49
AspLEI	GCGC	2 cut(s)	190, 289
AsuHPI	GGTGA	5 cut(s)	224, 238, 278, 454, 940
AsuII	TTCGAA	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	1162
BalI	TGGCCA	1 cut(s)	879
BanI	GGYRCC	1 cut(s)	1169
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	4 cut(s)	984, 1198, 1267, 1364
BccI	CCATC	3 cut(s)	907, 1258, 1287
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	535
BclI	TGATCA	3 cut(s)	243, 484, 1051
BcoDI	GTCTC	3 cut(s)	653, 925, 1309
BfaI	CTAG	3 cut(s)	710, 1199, 1364
BfmI	CTRYAG	1 cut(s)	1281
BfoI	RGCGCY	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	1079
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	4 cut(s)	973, 1212, 1281, 1353
BlsI	GCNGC	4 cut(s)	974, 1213, 1282, 1354
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	535
BmiI	GGNNCC	3 cut(s)	18, 61, 1171
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	5 cut(s)	291, 379, 545, 594, 1291
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	3 cut(s)	85, 443, 1253
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	925
BsaJI	CCNNGG	3 cut(s)	533, 880, 1044
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 534
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	153, 754
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	3 cut(s)	533, 880, 1044
BseGI	GGATG	3 cut(s)	226, 560, 997
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	56, 534
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	153, 754
BseSI	GKGCMC	1 cut(s)	1162
BseXI	GCAGC	4 cut(s)	984, 1198, 1267, 1364
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	356, 879
BshNI	GGYRCC	1 cut(s)	1169
BshTI	ACCGGT	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	56, 534
BsmAI	GTCTC	3 cut(s)	653, 925, 1309
BsmI	GAATGC	2 cut(s)	148, 558
BsnI	GGCC	2 cut(s)	356, 879
Bso31I	GGTCTC	1 cut(s)	925
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	1162
Bsp143I	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
Bsp19I	CCATGG	1 cut(s)	880
BspACI	CCGC	2 cut(s)	171, 264
BspANI	GGCC	2 cut(s)	356, 879
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	18, 61, 1171
BspMAI	CTGCAG	1 cut(s)	1285
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	1 cut(s)	1022
BspT104I	TTCGAA	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	1169
BspTNI	GGTCTC	1 cut(s)	925
BsrBI	CCGCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	153, 754
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	533, 880, 1044
BssMI	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
BssT1I	CCWWGG	2 cut(s)	880, 1044
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	529, 1361
Bst6I	CTCTTC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	395, 966, 970
BstDEI	CTNAG	3 cut(s)	72, 137, 1215
BstDSI	CCRYGG	1 cut(s)	880
BstEII	GGTNACC	1 cut(s)	704
BstF5I	GGATG	3 cut(s)	226, 560, 997
BstFNI	CGCG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	190, 289
BstKTI	GATC	7 cut(s)	246, 487, 719, 1030, 1054, 1075, 1114
BstMAI	GTCTC	3 cut(s)	653, 925, 1309
BstMBI	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 581, 1135, 1228
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	3 cut(s)	463, 968, 1065
BstPI	GGTNACC	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	1281
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	984, 1198, 1267, 1364
BstX2I	RGATCY	2 cut(s)	716, 1027
BstYI	RGATCY	2 cut(s)	716, 1027
BsuRI	GGCC	2 cut(s)	356, 879
BtgI	CCRYGG	1 cut(s)	880
BtsCI	GGATG	3 cut(s)	226, 560, 997
BtsI	GCAGTG	2 cut(s)	311, 1290
BtsIMutI	CAGTG	4 cut(s)	146, 311, 638, 1290
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	3 cut(s)	395, 966, 970
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	2 cut(s)	190, 289
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	134, 237, 620
CspAI	ACCGGT	1 cut(s)	49
CviQI	GTAC	3 cut(s)	134, 237, 620
DdeI	CTNAG	3 cut(s)	72, 137, 1215
DpnI	GATC	7 cut(s)	245, 486, 718, 1029, 1053, 1074, 1113
DpnII	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	880, 1044
Eco31I	GGTCTC	1 cut(s)	925
Eco91I	GGTNACC	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	880, 1044
EcoT22I	ATGCAT	3 cut(s)	560, 737, 1067
ErhI	CCWWGG	2 cut(s)	880, 1044
FauNDI	CATATG	1 cut(s)	1320
FbaI	TGATCA	3 cut(s)	243, 484, 1051
Fnu4HI	GCNGC	4 cut(s)	973, 1212, 1281, 1353
FokI	GGATG	3 cut(s)	233, 567, 1004
Fsp4HI	GCNGC	4 cut(s)	973, 1212, 1281, 1353
FspBI	CTAG	3 cut(s)	710, 1199, 1364
GlaI	GCGC	2 cut(s)	189, 288
GluI	GCNGC	4 cut(s)	973, 1212, 1281, 1353
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	356, 879
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	2 cut(s)	190, 289
Hin6I	GCGC	2 cut(s)	188, 287
HinP1I	GCGC	2 cut(s)	188, 287
HindIII	AAGCTT	2 cut(s)	419, 1104
HinfI	GANTC	3 cut(s)	425, 761, 1039
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	5 cut(s)	224, 238, 278, 454, 940
Hpy166II	GTNNAC	3 cut(s)	269, 405, 1160
Hpy188I	TCNGA	5 cut(s)	430, 489, 820, 912, 1032
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	3 cut(s)	269, 405, 1160
HpyAV	CCTTC	3 cut(s)	106, 305, 662
HpyCH4III	ACNGT	2 cut(s)	529, 1361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 581, 1135, 1228
HpyF3I	CTNAG	3 cut(s)	72, 137, 1215
HspAI	GCGC	2 cut(s)	188, 287
Ksp22I	TGATCA	3 cut(s)	243, 484, 1051
Kzo9I	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	4 cut(s)	984, 1198, 1267, 1364
LweI	GCATC	5 cut(s)	291, 379, 545, 594, 1291
MaeI	CTAG	3 cut(s)	710, 1199, 1364
MaeIII	GTNAC	7 cut(s)	45, 226, 331, 442, 704, 863, 943
MalI	GATC	7 cut(s)	245, 486, 718, 1029, 1053, 1074, 1113
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
MboII	GAAGA	5 cut(s)	96, 119, 136, 1067, 1302
MflI	RGATCY	2 cut(s)	716, 1027
MhlI	GDGCHC	1 cut(s)	1162
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	8 cut(s)	127, 325, 453, 538, 546, 590, 813, 1272
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	1 cut(s)	434
Mox20I	TGGCCA	1 cut(s)	879
Mph1103I	ATGCAT	3 cut(s)	560, 737, 1067
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	5 cut(s)	377, 452, 1023, 1340, 1373
MslI	CAYNNNNRTG	3 cut(s)	879, 1016, 1188
Msp20I	TGGCCA	1 cut(s)	879
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	535
Mva1269I	GAATGC	2 cut(s)	148, 558
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	295, 581, 1135, 1228
NcoI	CCATGG	1 cut(s)	880
NdeI	CATATG	1 cut(s)	1320
NdeII	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
NlaIV	GGNNCC	3 cut(s)	18, 61, 1171
NmuCI	GTSAC	3 cut(s)	226, 442, 943
NsiI	ATGCAT	3 cut(s)	560, 737, 1067
NspI	RCATGY	3 cut(s)	463, 968, 1065
NspV	TTCGAA	1 cut(s)	467
PaeI	GCATGC	1 cut(s)	968
PciI	ACATGT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	1090
PctI	GAATGC	2 cut(s)	148, 558
PfeI	GAWTC	2 cut(s)	761, 1039
PinAI	ACCGGT	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	974, 1213, 1282, 1354
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	3 cut(s)	18, 61, 1171
PstI	CTGCAG	1 cut(s)	1285
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	716, 1027
RsaI	GTAC	3 cut(s)	135, 238, 621
RsaNI	GTAC	3 cut(s)	134, 237, 620
RseI	CAYNNNNRTG	3 cut(s)	879, 1016, 1188
SaqAI	TTAA	5 cut(s)	377, 452, 1023, 1340, 1373
SatI	GCNGC	4 cut(s)	973, 1212, 1281, 1353
Sau3AI	GATC	7 cut(s)	243, 484, 716, 1027, 1051, 1072, 1111
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	1162
SfaNI	GCATC	5 cut(s)	291, 379, 545, 594, 1291
SfcI	CTRYAG	1 cut(s)	1281
SfuI	TTCGAA	1 cut(s)	467
SmiMI	CAYNNNNRTG	3 cut(s)	879, 1016, 1188
SmlI	CTYRAG	3 cut(s)	64, 422, 1232
SmoI	CTYRAG	3 cut(s)	64, 422, 1232
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	8 cut(s)	127, 325, 453, 538, 546, 590, 813, 1272
SsiI	CCGC	2 cut(s)	171, 264
SspMI	CTAG	3 cut(s)	710, 1199, 1364
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	2 cut(s)	880, 1044
TaaI	ACNGT	2 cut(s)	529, 1361
TaqI	TCGA	3 cut(s)	467, 542, 1093
TasI	AATT	8 cut(s)	127, 325, 453, 538, 546, 590, 813, 1272
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	761, 1039
Tru1I	TTAA	5 cut(s)	377, 452, 1023, 1340, 1373
Tru9I	TTAA	5 cut(s)	377, 452, 1023, 1340, 1373
TscAI	CASTG	4 cut(s)	153, 311, 645, 1290
TseFI	GTSAC	3 cut(s)	226, 442, 943
TseI	GCWGC	4 cut(s)	972, 1211, 1280, 1352
Tsp45I	GTSAC	3 cut(s)	226, 442, 943
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	4 cut(s)	153, 311, 645, 1290
VneI	GTGCAC	1 cut(s)	1158
XapI	RAATTY	6 cut(s)	127, 325, 538, 590, 813, 1272
XceI	RCATGY	3 cut(s)	463, 968, 1065
XspI	CTAG	3 cut(s)	710, 1199, 1364
ZrmI	AGTACT	1 cut(s)	238
Zsp2I	ATGCAT	3 cut(s)	560, 737, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.