Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003140.1

Orthogroup ID

OG0020515

Physical Location & Seq

Genomic Coordinates Forward (+)

51503 .. 52412

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003140.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgaatgtagtgtgctctccaagttttatggatagctcgcctgatgaaactacttcgaagtacttgaaattacctcccaaaagcagatcacccaaacggagtccaattggcactccatctgcagtagctgatgcacttagtactgtaagccctgggagtagtggtaggcgtgtatcaaatattggcaatgcaagtgatcaaaactcaaaggacatgtcgtcacctcctcacactgattggaaagggcttggagttgatgctcagcaagagccaggaagcccaagtatgagcttctctgagagacaaaggaagtggaaagaagagcttgatcaagagctagagagaaagcgaggtagatttttcttctattcttaccagcaagcctccagccccctcctgcccgcaccaggctgcgatctgcagcagcagaagcccagaccggcctcgtccagccccaaggatcggcgctgtcttcccaggccatcttctcaacctaaccccgatcctgccgatcgatcccagcgcagcccagtccttccggccaccaaaccttccacgatcggcctccttctccagtttgcgtcctcgtcagtcctccgtggcaacctcccagcagcccaagccgccagcagcccaggccgcgaacagtcaagcgccagcacctccgacctgcacagcagcccccgctgcaccgccgcacgctcccctgcaccttcctgctgcacagcggcgcgcacacccaacagccctcgctgcagcctagctcgtgcaccaccatccctgccgctgcatctcttccgactgccagcgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

271

Amino Acids

29.06

Weight (kDa)

9.9

Isoelectric Point (pI)

97.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020515)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0121761
rosa_multiflora	Rmu_sc0003140.1_g000015
rosa_roxburghii	Rroxscaffold_4G00296880
rosa_samantha	Rh3AG061800 Rh3BG063600 Rh3CG062500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	678
AccII	CGCG	2 cut(s)	642, 733
AciI	CCGC	8 cut(s)	402, 624, 640, 685, 693, 696, 728, 785
AclWI	GGATC	3 cut(s)	468, 497, 510
AcoI	YGGCCR	1 cut(s)	540
AfaI	GTAC	2 cut(s)	62, 142
AfiI	CCNNNNNNNGG	2 cut(s)	407, 462
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	217
AjnI	CCWGG	5 cut(s)	151, 271, 406, 476, 634
AluBI	AGCT	6 cut(s)	36, 128, 291, 325, 337, 764
AluI	AGCT	6 cut(s)	36, 128, 291, 325, 337, 764
Alw21I	GWGCWC	2 cut(s)	17, 772
Alw26I	GTCTC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	768
AlwI	GGATC	3 cut(s)	468, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	5 cut(s)	441, 479, 540, 562, 637
ApaLI	GTGCAC	1 cut(s)	768
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	5 cut(s)	468, 525, 656, 733, 735
AsuHPI	GGTGA	2 cut(s)	81, 213
AsuII	TTCGAA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	772
BauI	CACGAG	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	17, 772
BccI	CCATC	3 cut(s)	124, 490, 784
BciT130I	CCWGG	5 cut(s)	153, 273, 408, 478, 636
BclI	TGATCA	2 cut(s)	196, 328
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	338, 761
BfmI	CTRYAG	3 cut(s)	120, 419, 754
BfoI	RGCGCY	2 cut(s)	469, 657
BfuAI	ACCTGC	1 cut(s)	678
BlpI	GCTNAGC	1 cut(s)	261
BmcAI	AGTACT	2 cut(s)	62, 142
Bme1390I	CCNGG	5 cut(s)	153, 273, 408, 478, 636
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmrFI	CCNGG	5 cut(s)	153, 273, 408, 478, 636
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	121, 247, 799
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	2 cut(s)	370, 557
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	514
BsaJI	CCNNGG	6 cut(s)	151, 152, 456, 476, 598, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 462
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	530, 574
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	5 cut(s)	153, 273, 408, 478, 636
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	6 cut(s)	151, 152, 456, 476, 598, 634
BseGI	GGATG	1 cut(s)	776
BseLI	CCNNNNNNNGG	2 cut(s)	407, 462
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	275, 288
BseNI	ACTGG	2 cut(s)	530, 574
BsePI	GCGCGC	1 cut(s)	731
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	772
BseYI	CCCAGC	2 cut(s)	519, 610
BsgI	GTGCAG	4 cut(s)	656, 673, 693, 706
Bsh1236I	CGCG	2 cut(s)	642, 733
Bsh1285I	CGRYCG	2 cut(s)	514, 561
BshFI	GGCC	5 cut(s)	443, 481, 542, 564, 639
BshVI	ATCGAT	1 cut(s)	514
BsiEI	CGRYCG	2 cut(s)	514, 561
BsiHKAI	GWGCWC	2 cut(s)	17, 772
BsiSI	CCGG	2 cut(s)	440, 539
BslI	CCNNNNNNNGG	2 cut(s)	407, 462
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	5 cut(s)	443, 481, 542, 564, 639
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	17, 772
Bsp143I	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	8 cut(s)	402, 624, 640, 685, 693, 696, 728, 785
BspANI	GGCC	5 cut(s)	443, 481, 542, 564, 639
BspCNI	CTCAG	2 cut(s)	274, 289
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	2 cut(s)	642, 733
BspMAI	CTGCAG	3 cut(s)	124, 423, 758
BspMI	ACCTGC	1 cut(s)	678
BspPI	GGATC	3 cut(s)	468, 497, 510
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	530, 574
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	6 cut(s)	151, 152, 456, 476, 598, 634
BssHII	GCGCGC	1 cut(s)	731
BssMI	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	5 cut(s)	153, 273, 408, 478, 636
Bst4CI	ACNGT	2 cut(s)	145, 648
Bst6I	CTCTTC	2 cut(s)	315, 800
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	8 cut(s)	38, 381, 402, 628, 658, 700, 733, 807
BstDEI	CTNAG	3 cut(s)	137, 261, 297
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	776
BstFNI	CGCG	2 cut(s)	642, 733
BstH2I	RGCGCY	2 cut(s)	469, 657
BstHHI	GCGC	5 cut(s)	468, 525, 656, 733, 735
BstKTI	GATC	9 cut(s)	89, 199, 331, 418, 463, 505, 514, 518, 561
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
BstMCI	CGRYCG	2 cut(s)	514, 561
BstMWI	GCNNNNNNNGC	8 cut(s)	430, 620, 623, 636, 639, 684, 687, 753
BstNI	CCWGG	5 cut(s)	153, 273, 408, 478, 636
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	5 cut(s)	151, 271, 406, 476, 634
BstSFI	CTRYAG	3 cut(s)	120, 419, 754
BstSLI	GKGCMC	1 cut(s)	772
BstUI	CGCG	2 cut(s)	642, 733
BstV2I	GAAGAC	1 cut(s)	464
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	5 cut(s)	443, 481, 542, 564, 639
BsuTUI	ATCGAT	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	776
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	8 cut(s)	38, 381, 402, 628, 658, 700, 733, 807
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	5 cut(s)	468, 525, 656, 733, 735
Cfr10I	RCCGGY	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	514
CseI	GACGC	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	61, 141
CspCI	CAANNNNNGTGG	2 cut(s)	293, 328
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	2 cut(s)	61, 141
DdeI	CTNAG	3 cut(s)	137, 261, 297
DpnI	GATC	9 cut(s)	88, 198, 330, 417, 462, 504, 513, 517, 560
DpnII	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	315, 800
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	2 cut(s)	315, 800
Eco130I	CCWWGG	1 cut(s)	456
EcoRII	CCWGG	5 cut(s)	151, 271, 406, 476, 634
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	29, 215, 287
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	1 cut(s)	213
FauI	CCCGC	2 cut(s)	409, 692
FbaI	TGATCA	2 cut(s)	196, 328
FokI	GGATG	1 cut(s)	763
FspBI	CTAG	2 cut(s)	338, 761
GlaI	GCGC	5 cut(s)	467, 524, 655, 732, 734
GsaI	CCCAGC	2 cut(s)	523, 614
GsuI	CTGGAG	2 cut(s)	370, 557
HaeII	RGCGCY	2 cut(s)	469, 657
HaeIII	GGCC	5 cut(s)	443, 481, 542, 564, 639
HapII	CCGG	2 cut(s)	440, 539
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	5 cut(s)	468, 525, 656, 733, 735
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	5 cut(s)	466, 523, 654, 731, 733
HinP1I	GCGC	5 cut(s)	466, 523, 654, 731, 733
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	440, 539
HphI	GGTGA	2 cut(s)	81, 213
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	3 cut(s)	298, 667, 800
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	770
HpyAV	CCTTC	4 cut(s)	545, 561, 578, 723
HpyCH4III	ACNGT	2 cut(s)	145, 648
HpyF10VI	GCNNNNNNNGC	8 cut(s)	430, 620, 623, 636, 639, 684, 687, 753
HpyF3I	CTNAG	3 cut(s)	137, 261, 297
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	5 cut(s)	466, 523, 654, 731, 733
Ksp22I	TGATCA	2 cut(s)	196, 328
Kzo9I	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	707
LweI	GCATC	3 cut(s)	121, 247, 799
MaeI	CTAG	2 cut(s)	338, 761
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	9 cut(s)	88, 198, 330, 417, 462, 504, 513, 517, 560
MboI	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
MboII	GAAGA	5 cut(s)	332, 355, 464, 477, 787
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	17, 772
MluCI	AATT	2 cut(s)	68, 105
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	690
MspA1I	CMGCKG	3 cut(s)	687, 728, 787
MspI	CCGG	2 cut(s)	440, 539
MspR9I	CCNGG	5 cut(s)	153, 273, 408, 478, 636
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	5 cut(s)	153, 273, 408, 478, 636
MvnI	CGCG	2 cut(s)	642, 733
MwoI	GCNNNNNNNGC	8 cut(s)	430, 620, 623, 636, 639, 684, 687, 753
NdeII	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
NlaIII	CATG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	56
PasI	CCCWGGG	1 cut(s)	152
PauI	GCGCGC	1 cut(s)	731
PciI	ACATGT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	315
Ple19I	CGATCG	2 cut(s)	514, 561
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	5 cut(s)	151, 271, 406, 476, 634
PspFI	CCCAGC	2 cut(s)	519, 610
PspGI	CCWGG	5 cut(s)	151, 271, 406, 476, 634
PstI	CTGCAG	3 cut(s)	124, 423, 758
PstNI	CAGNNNCTG	1 cut(s)	128
PteI	GCGCGC	1 cut(s)	731
PvuI	CGATCG	2 cut(s)	514, 561
RsaI	GTAC	2 cut(s)	62, 142
RsaNI	GTAC	2 cut(s)	61, 141
SapI	GCTCTTC	1 cut(s)	315
Sau3AI	GATC	9 cut(s)	86, 196, 328, 415, 460, 502, 511, 515, 558
ScaI	AGTACT	2 cut(s)	62, 142
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	5 cut(s)	153, 273, 408, 478, 636
SduI	GDGCHC	2 cut(s)	17, 772
SfaNI	GCATC	3 cut(s)	121, 247, 799
SfcI	CTRYAG	3 cut(s)	120, 419, 754
SfuI	TTCGAA	1 cut(s)	56
Sse9I	AATT	2 cut(s)	68, 105
SsiI	CCGC	8 cut(s)	402, 624, 640, 685, 693, 696, 728, 785
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	338, 761
StyD4I	CCNGG	5 cut(s)	151, 271, 406, 476, 634
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	145, 648
TaqI	TCGA	2 cut(s)	56, 514
TasI	AATT	2 cut(s)	68, 105
TatI	WGTACW	2 cut(s)	60, 140
TauI	GCSGC	5 cut(s)	626, 642, 698, 731, 787
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	17, 60
TspGWI	ACGGA	2 cut(s)	112, 587
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	768
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	338, 761
ZrmI	AGTACT	2 cut(s)	62, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.