Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0020515

Physical Location & Seq

Genomic Coordinates Forward (+)

4274869 .. 4282411

Gene Structure 7543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATGTAGTGTGCTCTCCAAGTTTTATGCATAGCTTGCCTGATGAAAATACTTCGAAGTACTTGAAATTACCTCCCAAAAGCAGATCACCCAAACGGAGTCCAATTGGCACTCCATCTGCAGTAGCTGATGCACTTAGTACTGTAAGCCCTGGGAGTAGTGGTAGGCGTGTATCAAATATTGGCAATGCAAGTGATCAAAACTCAACGGACATGTCGTCACCTCCTCACACTGATTGGAAAGGGCTTGGAGTTGATGCTCAGCAAGAGCCAGGAAGCCCAAGTATGAGCTTCTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTAGAGAGAAAGCGAGAGATGATGCGCCAAGCAGGTGTAAGGAAAACATCATCGCCAAAGGATCGAGCTTTAAATAGGCAGAGAGAGCGGACAAGGCAAAGGCCACGTGTTTTGCCACACCTTAGAACAAGGATCCCCAATTTCATCAATGTGAAATTGGAATTCGTAGTGGTTGCTAAAGGCCTAGCTTGTGGAACTCCTCATATGATCAGTGCTACTATTGAAGGCCTTGCTCGGTTGGCTGATGAGTTTTCTGACCTTGTTTTCAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

203

Amino Acids

22.67

Weight (kDa)

10.0

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020515)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0121761
rosa_multiflora	Rmu_sc0003140.1_g000015
rosa_roxburghii	Rroxscaffold_4G00296880
rosa_samantha	Rh3AG061800 Rh3BG063600 Rh3CG062500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	424
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	3 cut(s)	405, 463, 476
AcsI	RAATTY	1 cut(s)	497
AcvI	CACGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	62, 142
AflIII	ACRYGT	2 cut(s)	213, 442
AgsI	TTSAA	3 cut(s)	67, 560, 604
AhdI	GACNNNNNGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	151, 271
AluBI	AGCT	7 cut(s)	36, 128, 291, 325, 337, 404, 524
AluI	AGCT	7 cut(s)	36, 128, 291, 325, 337, 404, 524
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	3 cut(s)	405, 463, 476
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	3 cut(s)	437, 517, 562
ApoI	RAATTY	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	81, 213
AsuII	TTCGAA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	153, 273
BclI	TGATCA	3 cut(s)	196, 328, 543
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	3 cut(s)	338, 521, 610
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	359
BlpI	GCTNAGC	1 cut(s)	261
BmcAI	AGTACT	2 cut(s)	62, 142
Bme1390I	CCNGG	2 cut(s)	153, 273
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	470
BmrFI	CCNGG	2 cut(s)	153, 273
BmsI	GCATC	3 cut(s)	121, 247, 348
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	151, 152
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	153, 273
BseDI	CCNNGG	2 cut(s)	151, 152
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	275, 288
BseRI	GAGGAG	2 cut(s)	216, 525
BshFI	GGCC	3 cut(s)	439, 519, 564
BsiHKAI	GWGCWC	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	439, 519, 564
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	3 cut(s)	439, 519, 564
BspCNI	CTCAG	2 cut(s)	274, 289
BspLI	GGNNCC	1 cut(s)	470
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	3 cut(s)	405, 463, 476
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	151, 152
BssMI	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
Bst2UI	CCWGG	2 cut(s)	153, 273
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	4 cut(s)	137, 261, 297, 458
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	6 cut(s)	89, 199, 331, 400, 471, 546
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 421, 430, 575
BstNI	CCWGG	2 cut(s)	153, 273
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	151, 271
BstSFI	CTRYAG	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	439, 519, 564
BtgZI	GCGATG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	231, 553
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	61, 141
CspCI	CAANNNNNGTGG	4 cut(s)	293, 328, 429, 464
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	2 cut(s)	61, 141
DdeI	CTNAG	4 cut(s)	137, 261, 297, 458
DpnI	GATC	6 cut(s)	88, 198, 330, 399, 470, 545
DpnII	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
DraI	TTTAAA	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	315
Eco147I	AGGCCT	2 cut(s)	519, 564
Eco72I	CACGTG	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	151, 271
EcoT22I	ATGCAT	1 cut(s)	33
FaeI	CATG	1 cut(s)	217
FaiI	YATR	6 cut(s)	29, 33, 215, 287, 540, 542
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	3 cut(s)	196, 328, 543
FspBI	CTAG	3 cut(s)	338, 521, 610
GlaI	GCGC	1 cut(s)	362
HaeIII	GGCC	3 cut(s)	439, 519, 564
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	2 cut(s)	81, 213
Hpy188I	TCNGA	2 cut(s)	298, 592
Hpy188III	TCNNGA	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	4 cut(s)	31, 122, 134, 191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 421, 430, 575
HpyF3I	CTNAG	4 cut(s)	137, 261, 297, 458
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	361
Ksp22I	TGATCA	3 cut(s)	196, 328, 543
Kzo9I	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
LguI	GCTCTTC	1 cut(s)	315
LpnPI	CCDG	6 cut(s)	54, 138, 165, 258, 285, 354
LweI	GCATC	3 cut(s)	121, 247, 348
MaeI	CTAG	3 cut(s)	338, 521, 610
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	6 cut(s)	88, 198, 330, 399, 470, 545
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
MboII	GAAGA	1 cut(s)	332
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	5 cut(s)	68, 105, 475, 491, 497
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	84, 234, 237, 546
Mph1103I	ATGCAT	1 cut(s)	33
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	153, 273
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	153, 273
MwoI	GCNNNNNNNGC	4 cut(s)	37, 421, 430, 575
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	33
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	56
PaqCI	CACCTGC	1 cut(s)	359
PasI	CCCWGGG	1 cut(s)	152
PceI	AGGCCT	2 cut(s)	519, 564
PciI	ACATGT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PleI	GAGTC	1 cut(s)	108
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	443
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	151, 271
PspCI	CACGTG	1 cut(s)	443
PspGI	CCWGG	2 cut(s)	151, 271
PspN4I	GGNNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	2 cut(s)	62, 142
RsaNI	GTAC	2 cut(s)	61, 141
RseI	CAYNNNNRTG	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	407
Sau3AI	GATC	6 cut(s)	86, 196, 328, 397, 468, 543
ScaI	AGTACT	2 cut(s)	62, 142
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	153, 273
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	3 cut(s)	121, 247, 348
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	68, 105, 475, 491, 497
SseBI	AGGCCT	2 cut(s)	519, 564
SsiI	CCGC	1 cut(s)	424
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	3 cut(s)	338, 521, 610
StuI	AGGCCT	2 cut(s)	519, 564
StyD4I	CCNGG	2 cut(s)	151, 271
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	56, 400
TasI	AATT	5 cut(s)	68, 105, 475, 491, 497
TatI	WGTACW	2 cut(s)	60, 140
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	238, 553
TseFI	GTSAC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	3 cut(s)	17, 60, 469
TspGWI	ACGGA	2 cut(s)	112, 224
TspRI	CASTG	2 cut(s)	238, 553
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	3 cut(s)	338, 521, 610
ZrmI	AGTACT	2 cut(s)	62, 142
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.