Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0020515

Physical Location & Seq

Genomic Coordinates Forward (+)

4274896 .. 4283385

Gene Structure 8490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG061800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCATAGCTTGCCTGATGAAAATACTTCGAAGTACTTGAAATTACCTCCCAAAAGCAGATCACCCAAACGGAGTCCAATTGGCACTCCATCTGCAGTAGCTGATGCACTTAGTACTGTAAGCCCTGGGAGTAGTGGTAGGCGTGTATCAAATATTGGCAATGCAAGTGATCAAAACTCAACGGACATGTCGTCACCTCCTCACACTGATTGGAAAGGGCTTGGAGTTGATGCTCAGCAAGAGCCAGGAAGCCCAAGTATGAGCTTCTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTAGAGAGAAAGCGAGAGATGATGCGCCAAGCAGGTGTAAGGAAAACATCATCGCCAAAGGATCGAGCTTTAAATAGGCAGAGAGAGCGGACAAGGGAAGAAGACCTCTCAAGTCTCAACTGTAAAATCAACCCAAACCCATTCAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

153

Amino Acids

17.13

Weight (kDa)

9.8

Isoelectric Point (pI)

74.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020515)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0121761
rosa_multiflora	Rmu_sc0003140.1_g000015
rosa_roxburghii	Rroxscaffold_4G00296880
rosa_samantha	Rh3AG061800 Rh3BG063600 Rh3CG062500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	35, 115
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	40, 454
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	124, 244
AluBI	AGCT	6 cut(s)	9, 101, 264, 298, 310, 377
AluI	AGCT	6 cut(s)	9, 101, 264, 298, 310, 377
Alw26I	GTCTC	2 cut(s)	268, 428
AlwI	GGATC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	54, 186
AsuII	TTCGAA	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	417
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	126, 246
BclI	TGATCA	2 cut(s)	169, 301
BcoDI	GTCTC	2 cut(s)	268, 428
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	332
BlpI	GCTNAGC	1 cut(s)	234
BmcAI	AGTACT	2 cut(s)	35, 115
Bme1390I	CCNGG	2 cut(s)	126, 246
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	126, 246
BmsI	GCATC	3 cut(s)	94, 220, 321
BpiI	GAAGAC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	124, 125
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	126, 246
BseDI	CCNNGG	2 cut(s)	124, 125
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	248, 261
BseRI	GAGGAG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	268, 428
Bsp119I	TTCGAA	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	59, 169, 301, 370
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	397
BspCNI	CTCAG	2 cut(s)	247, 262
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	288
BspT104I	TTCGAA	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	124, 125
BssMI	GATC	4 cut(s)	59, 169, 301, 370
Bst2UI	CCWGG	2 cut(s)	126, 246
Bst4CI	ACNGT	2 cut(s)	118, 431
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	110, 234, 270
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	4 cut(s)	62, 172, 304, 373
BstMAI	GTCTC	2 cut(s)	268, 428
BstMBI	GATC	4 cut(s)	59, 169, 301, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 394
BstNI	CCWGG	2 cut(s)	126, 246
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	124, 244
BstSFI	CTRYAG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	34, 114
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	34, 114
DdeI	CTNAG	3 cut(s)	110, 234, 270
DpnI	GATC	4 cut(s)	61, 171, 303, 372
DpnII	GATC	4 cut(s)	59, 169, 301, 370
DraI	TTTAAA	1 cut(s)	381
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	124, 244
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	6, 188, 260
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	2 cut(s)	169, 301
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	1 cut(s)	73
HphI	GGTGA	2 cut(s)	54, 186
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	305
HpyCH4III	ACNGT	2 cut(s)	118, 431
HpyCH4V	TGCA	4 cut(s)	4, 95, 107, 164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 394
HpyF3I	CTNAG	3 cut(s)	110, 234, 270
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	334
Ksp22I	TGATCA	2 cut(s)	169, 301
Kzo9I	GATC	4 cut(s)	59, 169, 301, 370
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	6 cut(s)	27, 111, 138, 231, 258, 327
LweI	GCATC	3 cut(s)	94, 220, 321
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	4 cut(s)	61, 171, 303, 372
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	4 cut(s)	59, 169, 301, 370
MboII	GAAGA	3 cut(s)	305, 419, 422
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	2 cut(s)	41, 78
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	57, 207, 210, 425
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	126, 246
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	126, 246
MwoI	GCNNNNNNNGC	2 cut(s)	10, 394
NdeII	GATC	4 cut(s)	59, 169, 301, 370
NlaIII	CATG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	29
PaqCI	CACCTGC	1 cut(s)	332
PasI	CCCWGGG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	124, 244
PspGI	CCWGG	2 cut(s)	124, 244
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	35, 115
RsaNI	GTAC	2 cut(s)	34, 114
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	380
Sau3AI	GATC	4 cut(s)	59, 169, 301, 370
ScaI	AGTACT	2 cut(s)	35, 115
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	126, 246
SfaNI	GCATC	3 cut(s)	94, 220, 321
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	41, 78
SsiI	CCGC	1 cut(s)	397
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	124, 244
TaaI	ACNGT	2 cut(s)	118, 431
TaqI	TCGA	2 cut(s)	29, 373
TasI	AATT	2 cut(s)	41, 78
TatI	WGTACW	2 cut(s)	33, 113
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	2 cut(s)	85, 197
TspRI	CASTG	1 cut(s)	211
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	2 cut(s)	35, 115
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.