Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD10G1015700.v1.1 |
| rosa_laevigata | RLG00000013332 |
| rosa_multiflora | Rmu_sc0003539.1_g000001 Rmu_sc0003539.1_g000002 Rmu_sc0006244.1_g000051 Rmu_sc0006244.1_g000052 |
| rosa_samantha | Rh6AG216700 Rh6CG224000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 19 |
| AccI | GTMKAC | 1 cut(s) | 139 |
| AclI | AACGTT | 1 cut(s) | 66 |
| AfaI | GTAC | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 285 |
| AgsI | TTSAA | 1 cut(s) | 314 |
| Alw21I | GWGCWC | 2 cut(s) | 202, 227 |
| Alw44I | GTGCAC | 2 cut(s) | 198, 223 |
| ApaLI | GTGCAC | 2 cut(s) | 198, 223 |
| ApeKI | GCWGC | 1 cut(s) | 322 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 80 |
| AsuHPI | GGTGA | 1 cut(s) | 133 |
| BaeGI | GKGCMC | 2 cut(s) | 202, 227 |
| Bbv12I | GWGCWC | 2 cut(s) | 202, 227 |
| BbvI | GCAGC | 1 cut(s) | 309 |
| BccI | CCATC | 1 cut(s) | 160 |
| BciVI | GTATCC | 1 cut(s) | 268 |
| BfuAI | ACCTGC | 1 cut(s) | 19 |
| BfuI | GTATCC | 1 cut(s) | 268 |
| BisI | GCNGC | 1 cut(s) | 323 |
| BlsI | GCNGC | 1 cut(s) | 324 |
| BmsI | GCATC | 1 cut(s) | 229 |
| BpuEI | CTTGAG | 3 cut(s) | 8, 194, 347 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 285 |
| Bse3DI | GCAATG | 2 cut(s) | 99, 148 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BseMI | GCAATG | 2 cut(s) | 99, 148 |
| BseSI | GKGCMC | 2 cut(s) | 202, 227 |
| BseXI | GCAGC | 1 cut(s) | 309 |
| BsgI | GTGCAG | 1 cut(s) | 282 |
| BsiHKAI | GWGCWC | 2 cut(s) | 202, 227 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 285 |
| Bsp1286I | GDGCHC | 2 cut(s) | 202, 227 |
| Bsp1407I | TGTACA | 1 cut(s) | 110 |
| BspMI | ACCTGC | 1 cut(s) | 19 |
| BsrDI | GCAATG | 2 cut(s) | 99, 148 |
| BsrGI | TGTACA | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 3 cut(s) | 191, 260, 280 |
| BstAUI | TGTACA | 1 cut(s) | 110 |
| BstSLI | GKGCMC | 2 cut(s) | 202, 227 |
| BstV1I | GCAGC | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 268 |
| BtsI | GCAGTG | 2 cut(s) | 160, 270 |
| BtsIMutI | CAGTG | 3 cut(s) | 160, 265, 270 |
| BveI | ACCTGC | 1 cut(s) | 19 |
| Csp6I | GTAC | 1 cut(s) | 111 |
| CviJI | RGCY | 2 cut(s) | 172, 322 |
| CviKI_1 | RGCY | 2 cut(s) | 172, 322 |
| CviQI | GTAC | 1 cut(s) | 111 |
| FaiI | YATR | 7 cut(s) | 128, 135, 187, 212, 216, 233, 309 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 186, 218 |
| FblI | GTMKAC | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 323 |
| GluI | GCNGC | 1 cut(s) | 323 |
| HphI | GGTGA | 1 cut(s) | 133 |
| Hpy166II | GTNNAC | 4 cut(s) | 84, 140, 200, 225 |
| Hpy188I | TCNGA | 1 cut(s) | 10 |
| Hpy8I | GTNNAC | 4 cut(s) | 84, 140, 200, 225 |
| Hpy99I | CGWCG | 1 cut(s) | 284 |
| HpyCH4III | ACNGT | 3 cut(s) | 191, 260, 280 |
| HpyCH4IV | ACGT | 2 cut(s) | 66, 86 |
| HpyCH4V | TGCA | 6 cut(s) | 63, 92, 153, 200, 225, 263 |
| HpySE526I | ACGT | 2 cut(s) | 66, 86 |
| LpnPI | CCDG | 2 cut(s) | 14, 288 |
| Lsp1109I | GCAGC | 1 cut(s) | 309 |
| LweI | GCATC | 1 cut(s) | 229 |
| MaeII | ACGT | 2 cut(s) | 66, 86 |
| MhlI | GDGCHC | 2 cut(s) | 202, 227 |
| MluCI | AATT | 1 cut(s) | 159 |
| MmeI | TCCRAC | 1 cut(s) | 252 |
| MnlI | CCTC | 1 cut(s) | 322 |
| MroXI | GAANNNNTTC | 1 cut(s) | 80 |
| MseI | TTAA | 5 cut(s) | 36, 45, 162, 339, 348 |
| MslI | CAYNNNNRTG | 1 cut(s) | 153 |
| NmeAIII | GCCGAG | 1 cut(s) | 223 |
| PdmI | GAANNNNTTC | 1 cut(s) | 80 |
| PkrI | GCNGC | 1 cut(s) | 324 |
| Psp1406I | AACGTT | 1 cut(s) | 66 |
| RsaI | GTAC | 1 cut(s) | 112 |
| RsaNI | GTAC | 1 cut(s) | 111 |
| RseI | CAYNNNNRTG | 1 cut(s) | 153 |
| SaqAI | TTAA | 5 cut(s) | 36, 45, 162, 339, 348 |
| SatI | GCNGC | 1 cut(s) | 323 |
| SduI | GDGCHC | 2 cut(s) | 202, 227 |
| SetI | ASST | 4 cut(s) | 33, 69, 89, 199 |
| SfaNI | GCATC | 1 cut(s) | 229 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 153 |
| SmlI | CTYRAG | 3 cut(s) | 23, 173, 326 |
| SmoI | CTYRAG | 3 cut(s) | 23, 173, 326 |
| Sse9I | AATT | 1 cut(s) | 159 |
| TaaI | ACNGT | 3 cut(s) | 191, 260, 280 |
| TaiI | ACGT | 2 cut(s) | 69, 89 |
| TasI | AATT | 1 cut(s) | 159 |
| TatI | WGTACW | 1 cut(s) | 110 |
| Tru1I | TTAA | 5 cut(s) | 36, 45, 162, 339, 348 |
| Tru9I | TTAA | 5 cut(s) | 36, 45, 162, 339, 348 |
| TscAI | CASTG | 3 cut(s) | 160, 265, 270 |
| TseI | GCWGC | 1 cut(s) | 322 |
| TspDTI | ATGAA | 1 cut(s) | 137 |
| TspRI | CASTG | 3 cut(s) | 160, 265, 270 |
| VneI | GTGCAC | 2 cut(s) | 198, 223 |
| XmiI | GTMKAC | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 80 |