Rmu_sc0003630.1_g000046

Belongs to the adaptor complexes large subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003630.1
OG0019900
Physical Location & Seq
Reverse (-)
144954 .. 146761
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003630.1_g000046.1.cds

Sequence Viewer

Length: 669 bp
atgctgcaattcaaaatattcttctctcgtctcagatttgagaaaaccggagtcggcggcaaccttggaggcttagaagttactcccacgagcaccgcgtgtggggggacgcgctgtttctctcacctccgcgccgtctctctcgcctccggctctctctctctcctccgcgcagtctctctcgcctccggcactgtctctctctcctccgcgccgactctctctctcctctgcgccgactctctctctctcctcctcgctctcgtcgcccagggcttcgatgtctccaatttcttccctcaggttgttaagaacgtagccactcagtcactggaggtcaagaggctagtttacttgtacctgttgcattatgctcagaagcgtccgaatgaggctttgctatcgattaattgcttccagaaggatctaggggatccgaacccgttggtgagggcatgggcactgcgagccatggctgggattaagctgcatgttattgcacctttggttgtggttgctgttggaaaatgtgctagagatccgtctgtgtatgttcgaaaatgtgctgccaatgcacttactaagctaatgatttgcgccttgatgagtatactagcagtattgaagaggtctgattcatttttatgttcaatagttgtagacttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
AP3B1_C Adaptin_N

Protein Analysis

222

Amino Acids

23.77

Weight (kDa)

9.63

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019900)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0137011
rosa_laevigata RLG00000003950
rosa_multiflora Rmu_sc0003630.1_g000046
rosa_samantha Rh2AG386200 Rh2CG373500 Rh2DG409200 Rh5DG128900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 610, 660
AccII CGCG 5 cut(s) 98, 112, 132, 171, 212
AciI CCGC 5 cut(s) 57, 96, 130, 169, 210
AclWI GGATC 4 cut(s) 428, 432, 441, 533
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 102, 477
AgsI TTSAA 3 cut(s) 13, 625, 651
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 487, 586
AluI AGCT 2 cut(s) 487, 586
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 5 cut(s) 35, 142, 181, 202, 289
AlwI GGATC 4 cut(s) 428, 432, 441, 533
AlwNI CAGNNNCTG 1 cut(s) 331
ApeKI GCWGC 3 cut(s) 4, 487, 566
AseI ATTAAT 1 cut(s) 408
AspLEI GCGC 6 cut(s) 114, 134, 173, 214, 236, 599
AsuHPI GGTGA 2 cut(s) 116, 460
AsuII TTCGAA 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 463
BamHI GGATCC 1 cut(s) 433
BauI CACGAG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 474, 553
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 5 cut(s) 35, 142, 181, 202, 289
BfaI CTAG 4 cut(s) 347, 428, 534, 614
BisI GCNGC 4 cut(s) 5, 58, 488, 567
BlsI GCNGC 4 cut(s) 6, 59, 489, 568
Bme1390I CCNGG 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 556
Bsa29I ATCGAT 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 64, 270, 271, 471
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 477
Bse1I ACTGG 1 cut(s) 336
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 404
BseDI CCNNGG 4 cut(s) 64, 270, 271, 471
BseLI CCNNNNNNNGG 2 cut(s) 102, 477
BseMII CTCAG 4 cut(s) 46, 314, 338, 389
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 5 cut(s) 155, 196, 218, 242, 245
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 2 cut(s) 474, 553
BseYI CCCAGC 1 cut(s) 476
Bsh1236I CGCG 5 cut(s) 98, 112, 132, 171, 212
BshVI ATCGAT 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 3 cut(s) 48, 150, 189
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 102, 477
BsmAI GTCTC 5 cut(s) 35, 142, 181, 202, 289
BsmBI CGTCTC 2 cut(s) 35, 142
BsmFI GGGAC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 95, 463
Bsp143I GATC 3 cut(s) 424, 433, 538
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 5 cut(s) 57, 96, 130, 169, 210
BspCNI CTCAG 4 cut(s) 45, 313, 337, 388
BspDI ATCGAT 1 cut(s) 404
BspFNI CGCG 5 cut(s) 98, 112, 132, 171, 212
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 4 cut(s) 428, 432, 441, 533
BspT104I TTCGAA 1 cut(s) 556
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 4 cut(s) 64, 270, 271, 471
BssMI GATC 3 cut(s) 424, 433, 538
BssNAI GTATAC 1 cut(s) 611
BssSI CACGAG 1 cut(s) 88
BssT1I CCWWGG 2 cut(s) 64, 471
Bst1107I GTATAC 1 cut(s) 611
Bst2BI CACGAG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 6 cut(s) 32, 73, 300, 324, 375, 582
BstDSI CCRYGG 1 cut(s) 471
BstFNI CGCG 5 cut(s) 98, 112, 132, 171, 212
BstHHI GCGC 6 cut(s) 114, 134, 173, 214, 236, 599
BstKTI GATC 3 cut(s) 427, 436, 541
BstMAI GTCTC 5 cut(s) 35, 142, 181, 202, 289
BstMBI GATC 3 cut(s) 424, 433, 538
BstMWI GCNNNNNNNGC 3 cut(s) 266, 467, 572
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 463
BstUI CGCG 5 cut(s) 98, 112, 132, 171, 212
BstV1I GCAGC 2 cut(s) 474, 553
BstX2I RGATCY 3 cut(s) 424, 433, 538
BstYI RGATCY 3 cut(s) 424, 433, 538
BstZ17I GTATAC 1 cut(s) 611
Bsu15I ATCGAT 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 192, 329, 461
Cac8I GCNNGC 1 cut(s) 468
CaiI CAGNNNCTG 1 cut(s) 331
CfoI GCGC 6 cut(s) 114, 134, 173, 214, 236, 599
ClaI ATCGAT 1 cut(s) 404
CseI GACGC 2 cut(s) 118, 371
Csp6I GTAC 1 cut(s) 358
CviAII CATG 3 cut(s) 456, 472, 491
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 6 cut(s) 32, 73, 300, 324, 375, 582
DpnI GATC 3 cut(s) 426, 435, 540
DpnII GATC 3 cut(s) 424, 433, 538
DraIII CACNNNGTG 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 64, 471
Eco81I CCTNAGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 64, 471
ErhI CCWWGG 2 cut(s) 64, 471
Esp3I CGTCTC 2 cut(s) 35, 142
FaeI CATG 3 cut(s) 459, 475, 494
FaiI YATR 7 cut(s) 372, 457, 473, 492, 552, 611, 646
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 455, 471, 490
FblI GTMKAC 2 cut(s) 610, 660
Fnu4HI GCNGC 4 cut(s) 5, 58, 488, 567
Fsp4HI GCNGC 4 cut(s) 5, 58, 488, 567
FspBI CTAG 4 cut(s) 347, 428, 534, 614
GlaI GCGC 6 cut(s) 113, 133, 172, 213, 235, 598
GluI GCNGC 4 cut(s) 5, 58, 488, 567
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 353
HapII CCGG 3 cut(s) 48, 150, 189
HgaI GACGC 2 cut(s) 118, 371
HhaI GCGC 6 cut(s) 114, 134, 173, 214, 236, 599
Hin1II CATG 3 cut(s) 459, 475, 494
Hin6I GCGC 6 cut(s) 112, 132, 171, 212, 234, 597
HinP1I GCGC 6 cut(s) 112, 132, 171, 212, 234, 597
HinfI GANTC 4 cut(s) 51, 217, 239, 635
HpaII CCGG 3 cut(s) 48, 150, 189
HphI GGTGA 2 cut(s) 116, 460
Hpy166II GTNNAC 3 cut(s) 352, 611, 661
Hpy188I TCNGA 5 cut(s) 35, 378, 387, 438, 634
Hpy188III TCNNGA 2 cut(s) 340, 418
Hpy8I GTNNAC 3 cut(s) 352, 611, 661
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 7, 367, 490, 500, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 467, 572
HpyF3I CTNAG 6 cut(s) 32, 73, 300, 324, 375, 582
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 3 cut(s) 459, 475, 494
HspAI GCGC 6 cut(s) 112, 132, 171, 212, 234, 597
Kzo9I GATC 3 cut(s) 424, 433, 538
Lsp1109I GCAGC 2 cut(s) 474, 553
MaeI CTAG 4 cut(s) 347, 428, 534, 614
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 79, 327
MalI GATC 3 cut(s) 426, 435, 540
MboI GATC 3 cut(s) 424, 433, 538
MboII GAAGA 3 cut(s) 13, 286, 637
MflI RGATCY 3 cut(s) 424, 433, 538
MhlI GDGCHC 2 cut(s) 95, 463
MluCI AATT 3 cut(s) 8, 289, 409
MlyI GAGTC 3 cut(s) 60, 211, 233
MmeI TCCRAC 1 cut(s) 502
MseI TTAA 3 cut(s) 309, 408, 483
MslI CAYNNNNRTG 1 cut(s) 643
MspI CCGG 3 cut(s) 48, 150, 189
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 5 cut(s) 98, 112, 132, 171, 212
MwoI GCNNNNNNNGC 3 cut(s) 266, 467, 572
NcoI CCATGG 1 cut(s) 471
NdeII GATC 3 cut(s) 424, 433, 538
NlaIII CATG 3 cut(s) 459, 475, 494
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 327
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 556
PasI CCCWGGG 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PfeI GAWTC 1 cut(s) 635
PkrI GCNGC 4 cut(s) 6, 59, 489, 568
PleI GAGTC 3 cut(s) 59, 211, 233
PpsI GAGTC 3 cut(s) 59, 211, 233
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 3 cut(s) 424, 433, 538
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 643
SaqAI TTAA 3 cut(s) 309, 408, 483
SatI GCNGC 4 cut(s) 5, 58, 488, 567
Sau3AI GATC 3 cut(s) 424, 433, 538
SchI GAGTC 3 cut(s) 60, 211, 233
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 2 cut(s) 95, 463
SfuI TTCGAA 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 643
Sse9I AATT 3 cut(s) 8, 289, 409
SsiI CCGC 5 cut(s) 57, 96, 130, 169, 210
SspI AATATT 1 cut(s) 18
SspMI CTAG 4 cut(s) 347, 428, 534, 614
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 64, 471
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 279, 404, 556
TasI AATT 3 cut(s) 8, 289, 409
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 3 cut(s) 309, 408, 483
Tru9I TTAA 3 cut(s) 309, 408, 483
TscAI CASTG 3 cut(s) 199, 336, 468
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 3 cut(s) 4, 487, 566
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 627
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 3 cut(s) 199, 336, 468
VspI ATTAAT 1 cut(s) 408
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 610, 660
XspI CTAG 4 cut(s) 347, 428, 534, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.